# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1slvA 142 1.66e+00 1sluA b.16.1.1 23688 1sluA 142 2.23e+00 1sluA b.16.1.1 23685 1ihgA 370 2.67e+00 2cpl a.118.8.1 62380 b.62.1.1 62381 1i2hA 168 2.81e+00 1irk 306 3.85e+00 1fmk d.144.1.2 41703 1ir3A 306 3.99e+00 1fmk d.144.1.2 41702 1jroB 777 4.72e+00 d.41.1.1 67141 d.133.1.1 67142 1jpaA 312 4.72e+00 d.144.1.2 67011 1mak 113 5.39e+00 8fabA b.1.1.1 19825 1ddvA 111 5.53e+00 1evhA b.55.1.4 27002 1ddwA 120 5.70e+00 1evhA b.55.1.4 27001 1jenA 267 5.92e+00 1jenA 1f0lA 535 5.99e+00 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 1apyB 141 6.16e+00 1apyB 1ddt 535 6.18e+00 1ddt b.2.1.1 22379 d.166.1.1 42241 f.1.2.1 43384 1dfnA 30 6.82e+00 g.9.1.1 44570 1eaiC 61 9.57e+00 1eaiC g.22.1.1 44894 1j6nA 303 1.17e+01 1avgI 142 1.38e+01 1avgI b.60.1.3 27229 1je5A 206 1.45e+01 1je5A b.40.4.7 62909 1ib8A 164 1.54e+01 1lba 146 1.67e+01 1lba d.118.1.1 41062 1qr6A 584 1.72e+01 1qr6A c.2.1.7 30293 c.58.1.3 33941 1iqaA 160 1.86e+01 1rhd 293 1.88e+01 1rhs c.46.1.2 32715 c.46.1.2 32716 1fthA 122 2.08e+01 d.150.1.2 60028 1dlfL 113 2.15e+01 8fabA b.1.1.1 20382 1a1z 91 2.27e+01 1a1z a.77.1.1 18427 1a4yB 123 2.38e+01 7rsa d.5.1.1 37296 1cp3A 277 2.46e+01 1pauA c.17.1.1 30992 1rhs 296 2.55e+01 1rhs c.46.1.2 32703 c.46.1.2 32704 1g0sA 209 2.61e+01 1g0sA d.113.1.1 60187 1qppA 218 2.74e+01 1qpxA b.1.11.1 22320 b.7.2.1 23202 1qhxA 178 2.77e+01 1qhsA c.37.1.3 31936 1pdgA 109 2.80e+01 1pdgA g.17.1.1 44748 1pdgC 109 2.83e+01 1pdgA g.17.1.1 44750 1nglA 179 2.83e+01 1nglA b.60.1.1 27146 1ecl 597 2.83e+01 1ecl e.10.1.1 43238 1icfA 175 2.98e+01 1cs8A d.3.1.1 37067 1b65A 375 3.07e+01 1b65A d.154.1.1 42020 1ftkA 279 3.20e+01 1gr2A c.94.1.1 35819 1gr2A 279 3.21e+01 1gr2A c.94.1.1 35825 1hxmA 229 3.27e+01 1hxmA b.1.1.1 61367 b.1.1.2 61368 1qhsA 178 3.56e+01 1qhsA c.37.1.3 31938 1nra 63 3.71e+01 1aho g.3.7.1 44126 1kyqA 274 3.81e+01 1dqsA 393 3.82e+01 1dqsA e.22.1.1 43347 1jm7B 117 3.93e+01 g.44.1.1 66881