# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qgwC 177 4.25e-01 1qgwC a.1.1.3 15673 1ezm 301 7.46e-01 1hyt d.92.1.2 58980 1k2yX 463 7.79e-01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 c.84.1.1 68066 1hbq 183 2.15e+00 1aqb b.60.1.1 27078 1hbp 183 2.34e+00 1aqb b.60.1.1 27079 1aqb 183 2.58e+00 1aqb b.60.1.1 27084 1qkmA 255 4.44e+00 3erdA a.123.1.1 19309 1jp3A 253 4.81e+00 1f75A c.101.1.1 63221 1hv8A 367 5.19e+00 1hv8A c.37.1.13 32405 c.37.1.13 32406 1eu8A 409 5.35e+00 1eu8A c.94.1.1 59502 1cuk 203 5.85e+00 1hjp a.5.1.1 16273 a.60.2.1 17946 b.40.4.2 25265 1k3eA 156 5.95e+00 d.198.1.1 68103 1exnA 290 6.97e+00 1exnA a.60.7.1 18088 c.53.1.2 33358 1exnB 290 7.08e+00 1exnA a.60.7.1 18089 c.53.1.2 33359 1lox 662 7.13e+00 1lox a.119.1.2 19238 b.12.1.1 23638 1g24A 211 7.18e+00 1g24A d.166.1.1 42270 3cla 213 7.91e+00 3cla c.43.1.1 32610 1pyaB 228 8.29e+00 1pyaB 1cnt2 187 8.58e+00 1cnt3 1ekeA 230 8.67e+00 1ekeA c.55.3.1 33572 1bed 181 9.46e+00 1fvkA a.44.1.1 17514 c.47.1.4 32808 1io2A 213 9.71e+00 1ekeA c.55.3.1 62612 1hjp 203 9.71e+00 1hjp a.5.1.1 16274 a.60.2.1 17947 b.40.4.2 25266 1hm6A 346 1.04e+01 1avc a.65.1.1 18147 1yuiA 54 1.09e+01 1yuiA g.37.1.1 45073 1efnB 152 1.21e+01 1efnB d.102.1.1 40699 1cb6A 691 1.28e+01 1cb6A c.94.1.2 35840 c.94.1.2 35841 1aokB 122 1.33e+01 1poa a.133.1.2 19561 1c1dA 355 1.36e+01 1bw9A c.2.1.7 30270 c.58.1.1 33918 1cc1L 498 1.38e+01 1h2rL e.18.1.1 43301 1a0p 290 1.44e+01 1a0p a.60.9.1 18105 d.163.1.1 42165 1fntc 245 1.45e+01 1rbp 182 1.47e+01 1aqb b.60.1.1 27085 1lx7A 253 1.48e+01 1brlB 324 1.49e+01 1lucA c.1.16.1 29554 1jyoA 130 1.51e+01 d.198.1.1 67483 1qlpA 394 1.55e+01 1ovaA e.1.1.1 42628 1atzB 189 1.58e+01 1atzA c.62.1.1 34133 1jeyA 609 1.62e+01 1jeqA e.31.1.1 62924 1fe8A 196 1.63e+01 1atzA c.62.1.1 59783 1crxA 322 1.66e+01 4crxA a.60.9.1 18097 d.163.1.1 42157 1khvA 516 1.66e+01 e.8.1.4 68627 1ig0A 319 1.75e+01 1ig0A b.82.6.1 62354 c.100.1.1 62355 1bw9A 356 1.75e+01 1bw9A c.2.1.7 30274 c.58.1.1 33922 1pfkA 320 1.75e+01 3pfk c.89.1.1 35575 1pvdA 537 1.76e+01 1zpdA c.31.1.3 31737 c.36.1.1 31777 c.36.1.1 31778 1pydA 556 1.84e+01 1zpdA c.31.1.3 31735 c.36.1.1 31773 c.36.1.1 31774 1ryt 190 1.91e+01 1ryt a.25.1.1 16646 g.41.5.1 45245 1a8y 367 1.91e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1f44A 324 1.92e+01 a.60.9.1 64982 d.163.1.1 64983 1dvbA 191 1.92e+01 1ryt a.25.1.1 16645 g.41.5.1 45244 1atzA 189 1.95e+01 1atzA c.62.1.1 34132 1kbuA 349 2.05e+01 1cxqA 162 2.11e+01 1cxqA c.55.3.2 33621 3crxA 343 2.16e+01 4crxA a.60.9.1 18101 d.163.1.1 42161 9apiA 347 2.25e+01 1ovaA e.1.1.1 42630 1qpbA 563 2.27e+01 1zpdA c.31.1.3 31739 c.36.1.1 31781 c.36.1.1 31782 1go4A 205 2.28e+01 1k8kA 418 2.28e+01 c.55.1.1 68305 c.55.1.1 68306 1kq4A 232 2.37e+01 d.207.1.1 68791 2pfkA 320 2.42e+01 3pfk c.89.1.1 35577 2hmiA 558 2.44e+01 1rthA c.55.3.1 33604 e.8.1.2 43106 1fwyA 331 2.45e+01 1fwyA b.81.1.4 28064 c.68.1.5 34522 1rpl 251 2.47e+01 1bpyA e.9.1.1 43212 1f2tB 148 2.48e+01 1f2tB 1lucB 324 2.52e+01 1lucA c.1.16.1 29548 1hv9A 456 2.62e+01 1fwyA b.81.1.4 28060 c.68.1.5 34518 4crxA 322 2.64e+01 4crxA a.60.9.1 18095 d.163.1.1 42155 1dkgD 383 2.72e+01 1ba1 c.55.1.1 33427 c.55.1.1 33428 1b71A 191 2.93e+01 1ryt a.25.1.1 16647 g.41.5.1 45246 1rypF 233 2.96e+01 1rypF d.153.1.4 41937 1gaxA 862 2.98e+01 1gaxA a.27.1.1 16928 b.51.1.1 26893 c.26.1.1 31595 1i3dA 146 3.00e+01 a.1.1.2 61587 1aba 87 3.00e+01 1aba c.47.1.1 32760 1eq2A 310 3.00e+01 1eq2A c.2.1.2 29814 1vsd 152 3.04e+01 1cxqA c.55.3.2 33625 1ihfA 99 3.09e+01 1huuA a.55.1.1 17893 1fjgI 128 3.15e+01 1fjfI d.14.1.1 37559 1dgqA 188 3.16e+01 1ido c.62.1.1 34131 1asu 162 3.18e+01 1cxqA c.55.3.2 33626 1jltB 122 3.36e+01 a.133.1.2 66868 1k8eA 345 3.41e+01 1dt6A 473 3.46e+01 1dt6A a.104.1.1 18977 1l2iA 261 3.61e+01 1d8dA 377 3.66e+01 1ft1A a.118.6.1 19185 1p35A 299 3.67e+01 1p35A b.28.1.1 23925 1ip9A 85 3.72e+01 1ip9A d.15.2.2 62638 1jcrA 377 3.76e+01 a.118.6.1 66506 3bifA 468 3.93e+01 1bif c.37.1.7 31962 c.60.1.4 34008 1hqkA 154 3.94e+01 c.16.1.1 65902 1bif 469 3.98e+01 1bif c.37.1.7 31961 c.60.1.4 34003