# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jk7A 323 6.01e-01 1auiA d.159.1.3 63144 1u32A 293 6.69e-01 d.159.1.3 107631 1fjmA 330 8.10e-01 1auiA d.159.1.3 42082 1d0nA 729 1.86e+00 1d0nA d.109.1.1 40834 d.109.1.1 40835 d.109.1.1 40836 d.109.1.1 40837 d.109.1.1 40838 d.109.1.1 40839 1gqpA 221 2.33e+00 b.18.1.9 70372 1f28A 297 3.96e+00 1bkpA d.117.1.1 59608 1zckA 154 4.30e+00 1ziwA 680 5.25e+00 1rxdA 159 5.51e+00 1wkrA 340 5.66e+00 b.50.1.2 109395 1p8xA 344 5.84e+00 d.109.1.1 94365 d.109.1.1 94366 d.109.1.1 94367 1adqH 225 6.11e+00 1igtB b.1.1.1 20273 b.1.1.2 21273 2bzlA 325 8.00e+00 1z41A 338 8.74e+00 1q40B 219 9.08e+00 d.17.4.2 95771 1d8dB 437 9.26e+00 1ft1B a.102.4.3 18866 1rmg 422 9.77e+00 1rmg b.80.1.3 28029 1eysH 259 1.01e+01 6prcH b.41.1.1 25484 f.23.10.1 43517 1prcH 259 1.02e+01 6prcH b.41.1.1 25460 f.23.10.1 43445 1mkfA 382 1.13e+01 b.116.1.1 79232 1tdtA 259 1.21e+01 3tdt b.81.1.2 28055 6prcH 258 1.27e+01 6prcH b.41.1.1 25457 f.23.10.1 43436 1kgqA 274 1.37e+01 b.81.1.2 72447 1jcrB 437 1.51e+01 a.102.4.3 66507 1dxrH 258 1.54e+01 6prcH b.41.1.1 25456 f.23.10.1 43433 1wguA 136 1.59e+01 1cjtA 217 1.60e+01 1azsA d.58.29.1 39419 1dxrL 273 1.60e+01 6prcL f.26.1.1 43431 1yzfA 195 1.60e+01 1l6rA 227 1.63e+01 c.108.1.10 77768 1azsA 220 1.66e+01 1azsA d.58.29.1 39416 1p30A 952 1.68e+01 b.121.2.2 93964 b.121.2.2 93965 1bqhG 129 1.71e+01 1cd8 b.1.1.1 19715 1t5hX 504 1.73e+01 e.23.1.1 106449 1bt3A 345 1.77e+01 1bt3A a.86.1.2 18507 1upiA 225 1.77e+01 b.82.1.1 99757 1e2tA 284 1.78e+01 1e2tA d.3.1.5 37121 1avk 638 1.78e+01 1a2vA b.30.2.1 24410 d.17.2.1 38047 d.17.2.1 38048 6prcL 273 1.81e+01 6prcL f.26.1.1 43434 1eaf 243 1.83e+01 1eaf c.43.1.1 32617 2bvyA 475 1.87e+01 1k42A 168 2.01e+01 b.18.1.14 72032 1ft1B 437 2.10e+01 1ft1B a.102.4.3 18867 1dpb 243 2.16e+01 1eaf c.43.1.1 32618 1try 224 2.23e+01 5ptp b.47.1.2 26017 1o0uA 429 2.24e+01 c.118.1.1 80743 1culA 217 2.27e+01 1azsA d.58.29.1 39417 1pujA 282 2.36e+01 c.37.1.8 88294 1itkA 731 2.37e+01 a.93.1.3 71417 a.93.1.3 71418 1uteA 313 2.39e+01 1uteA d.159.1.1 42078 2tdt 274 2.40e+01 3tdt b.81.1.2 28054 2sqcA 631 2.41e+01 2sqcA a.102.4.2 18854 a.102.4.2 18855 3tdt 274 2.43e+01 3tdt b.81.1.2 28053 2b8nA 429 2.44e+01 1pq7A 224 2.50e+01 b.47.1.2 95002 1fn8A 224 2.55e+01 5ptp b.47.1.2 26012 1air 353 2.61e+01 1air b.80.1.1 28018 2pec 353 2.61e+01 1air b.80.1.1 28019 1sqc 631 2.66e+01 2sqcA a.102.4.2 18858 a.102.4.2 18859 2aaiB 262 2.77e+01 1abrB b.42.2.1 25561 b.42.2.1 25562 1xszA 356 2.77e+01 1qfcA 306 2.81e+01 1uteA d.159.1.1 42077 1z3iX 644 2.82e+01 1z90A 469 2.85e+01 1zpsA 138 3.05e+01 1a5fH 217 3.10e+01 1igtB b.1.1.1 20303 b.1.1.2 21295 2fcr 173 3.12e+01 1rcf c.23.5.1 31151 2cvhA 220 3.12e+01 1ai1H 221 3.13e+01 1igtB b.1.1.1 19883 b.1.1.2 20979 2bbkH 355 3.13e+01 2bbkH b.69.2.1 27634 1npeA 267 3.15e+01 b.68.5.1 92032 1j0fA 100 3.16e+01 c.47.1.14 90739 1wyuA 438 3.25e+01 2rmpA 361 3.26e+01 2rmpA b.50.1.2 26825 1m2tB 263 3.27e+01 b.42.2.1 84762 b.42.2.1 84763 1ktbA 405 3.38e+01 b.71.1.1 72960 c.1.8.1 72961 1ae6H 218 3.44e+01 1igtB b.1.1.1 20211 b.1.1.2 21223 1tn6B 437 3.46e+01 1ar1B 298 3.47e+01 2occB b.6.1.2 23037 f.17.2.1 43619 1q9jA 422 3.61e+01 c.43.1.2 104590 c.43.1.2 104591 1ollA 188 3.68e+01 b.1.1.4 93313 b.1.1.4 93314 1qh4A 380 3.69e+01 1qh4A a.83.1.1 18462 d.128.1.2 41197 1ld8B 437 3.80e+01 a.102.4.3 73839 1o88A 353 3.90e+01 b.80.1.1 81178