# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fjmA 330 6.17e-01 1auiA d.159.1.3 42082 1jk7A 323 7.18e-01 1auiA d.159.1.3 63144 1d0nA 729 8.76e-01 1d0nA d.109.1.1 40834 d.109.1.1 40835 d.109.1.1 40836 d.109.1.1 40837 d.109.1.1 40838 d.109.1.1 40839 1u32A 293 9.76e-01 d.159.1.3 107631 1xm7A 195 1.13e+00 1dxrH 258 1.32e+00 6prcH b.41.1.1 25456 f.23.10.1 43433 6prcH 258 1.32e+00 6prcH b.41.1.1 25457 f.23.10.1 43436 1prcH 259 1.62e+00 6prcH b.41.1.1 25460 f.23.10.1 43445 1wkrA 340 2.75e+00 b.50.1.2 109395 1q40B 219 4.16e+00 d.17.4.2 95771 1cx8B 639 4.32e+00 1cx8B a.48.2.1 17783 c.8.4.1 30764 c.56.5.5 33852 1eysH 259 4.41e+00 6prcH b.41.1.1 25484 f.23.10.1 43517 1cx8A 639 4.71e+00 1cx8B a.48.2.1 17782 c.8.4.1 30763 c.56.5.5 33851 1bqhG 129 5.02e+00 1cd8 b.1.1.1 19715 1f28A 297 5.77e+00 1bkpA d.117.1.1 59608 1rxdA 159 5.79e+00 1t5hX 504 5.81e+00 e.23.1.1 106449 1zckA 154 6.22e+00 2pec 353 6.33e+00 1air b.80.1.1 28019 1rmg 422 7.16e+00 1rmg b.80.1.3 28029 1p8xA 344 7.84e+00 d.109.1.1 94365 d.109.1.1 94366 d.109.1.1 94367 1air 353 7.87e+00 1air b.80.1.1 28018 2bzlA 325 8.43e+00 1gqpA 221 9.81e+00 b.18.1.9 70372 1x24A 180 9.89e+00 1o88A 353 1.01e+01 b.80.1.1 81178 1e2tA 284 1.02e+01 1e2tA d.3.1.5 37121 1culA 217 1.05e+01 1azsA d.58.29.1 39417 1khbA 625 1.08e+01 c.91.1.1 68606 c.109.1.1 68607 1pujA 282 1.10e+01 c.37.1.8 88294 1azsA 220 1.14e+01 1azsA d.58.29.1 39416 6prcL 273 1.16e+01 6prcL f.26.1.1 43434 1k42A 168 1.20e+01 b.18.1.14 72032 1cjtA 217 1.24e+01 1azsA d.58.29.1 39419 1dxrL 273 1.25e+01 6prcL f.26.1.1 43431 2madH 373 1.31e+01 2bbkH b.69.2.1 27639 1adqH 225 1.40e+01 1igtB b.1.1.1 20273 b.1.1.2 21273 1oboA 169 1.41e+01 c.23.5.1 86776 1jcrB 437 1.41e+01 a.102.4.3 66507 1de4C 640 1.43e+01 1cx8B a.48.2.1 17779 c.8.4.1 30760 c.56.5.5 33848 1tdtA 259 1.44e+01 3tdt b.81.1.2 28055 1d8dB 437 1.45e+01 1ft1B a.102.4.3 18866 1fn8A 224 1.46e+01 5ptp b.47.1.2 26012 1pq7A 224 1.46e+01 b.47.1.2 95002 2asi 360 1.61e+01 2rmpA b.50.1.2 26824 1e1hA 287 1.69e+01 d.92.1.7 83167 2d0oB 125 1.73e+01 1try 224 1.79e+01 5ptp b.47.1.2 26017 1izlA 360 1.82e+01 i.5.1.1 76994 1gotB 340 1.99e+01 1tbgA b.69.4.1 27648 1zpsA 138 2.05e+01 1tbgA 340 2.13e+01 1tbgA b.69.4.1 27649 1f0lA 535 2.13e+01 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 3tdt 274 2.14e+01 3tdt b.81.1.2 28053 2bbkH 355 2.14e+01 2bbkH b.69.2.1 27634 1ot1A 686 2.28e+01 b.1.18.2 87392 b.3.1.1 87393 b.71.1.1 87394 c.1.8.1 87395 1ft1B 437 2.31e+01 1ft1B a.102.4.3 18867 1k5cA 335 2.32e+01 b.80.1.3 72076 1o0uA 429 2.35e+01 c.118.1.1 80743 1a0rB 340 2.48e+01 1tbgA b.69.4.1 27658 1rcf 169 2.53e+01 1rcf c.23.5.1 31170 2tdt 274 2.58e+01 3tdt b.81.1.2 28054 2rmpA 361 2.61e+01 2rmpA b.50.1.2 26825 1ollA 188 2.62e+01 b.1.1.4 93313 b.1.1.4 93314 1tn6B 437 2.63e+01 2b8nA 429 2.66e+01 1kgqA 274 2.70e+01 b.81.1.2 72447 1cxlA 686 2.71e+01 1cxlA b.1.18.2 21829 b.3.1.1 22498 b.71.1.1 27736 c.1.8.1 28723 1y8qB 640 2.72e+01 1ld8B 437 2.74e+01 a.102.4.3 73839 1jfkA 134 2.79e+01 a.39.1.5 66639 1m56B 264 2.85e+01 b.6.1.2 74472 f.17.2.1 74473 1tikA 213 2.98e+01 c.23.5.3 107003 1zq1A 438 3.03e+01 1v54B 227 3.20e+01 b.6.1.2 100322 f.17.2.1 100323 1spuB 727 3.38e+01 1oacA b.30.2.1 24399 d.17.2.1 38025 d.17.2.1 38026 d.82.1.1 40012 1ah0 316 3.41e+01 1frb c.1.7.1 28685 1z3iX 644 3.41e+01 1jofA 365 3.46e+01 b.69.10.1 71775 1xubA 298 3.67e+01 1oacA 727 3.70e+01 1oacA b.30.2.1 24390 d.17.2.1 38007 d.17.2.1 38008 d.82.1.1 40003 1svb 395 3.75e+01 1svb b.1.18.4 21814 f.10.1.1 43827 1d6zA 727 3.75e+01 1oacA b.30.2.1 24394 d.17.2.1 38015 d.17.2.1 38016 d.82.1.1 40007 1yxmA 303 3.79e+01 1upiA 225 3.94e+01 b.82.1.1 99757