# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1u32A 293 5.62e-01 d.159.1.3 107631 1jk7A 323 5.80e-01 1auiA d.159.1.3 63144 1prcH 259 7.10e-01 6prcH b.41.1.1 25460 f.23.10.1 43445 6prcH 258 8.67e-01 6prcH b.41.1.1 25457 f.23.10.1 43436 1dxrH 258 9.50e-01 6prcH b.41.1.1 25456 f.23.10.1 43433 1fjmA 330 1.32e+00 1auiA d.159.1.3 42082 2rmpA 361 2.48e+00 2rmpA b.50.1.2 26825 1zckA 154 2.48e+00 1rxdA 159 2.60e+00 2bzlA 325 2.70e+00 1d0nA 729 2.78e+00 1d0nA d.109.1.1 40834 d.109.1.1 40835 d.109.1.1 40836 d.109.1.1 40837 d.109.1.1 40838 d.109.1.1 40839 1gqpA 221 2.97e+00 b.18.1.9 70372 1q40B 219 3.11e+00 d.17.4.2 95771 1x24A 180 3.22e+00 1z90A 469 3.26e+00 2asi 360 3.42e+00 2rmpA b.50.1.2 26824 1eysH 259 3.97e+00 6prcH b.41.1.1 25484 f.23.10.1 43517 1air 353 4.40e+00 1air b.80.1.1 28018 1o88A 353 4.76e+00 b.80.1.1 81178 2pec 353 4.94e+00 1air b.80.1.1 28019 1jffB 445 5.26e+00 c.32.1.1 62934 d.79.2.1 62935 1nkgA 508 5.74e+00 b.3.1.2 103859 b.18.1.25 103860 b.30.5.10 103861 1xm7A 195 5.78e+00 1y8qB 640 5.92e+00 1pujA 282 6.81e+00 c.37.1.8 88294 3aprE 325 6.87e+00 2er7E b.50.1.2 26820 1bqhG 129 7.16e+00 1cd8 b.1.1.1 19715 1rmg 422 7.82e+00 1rmg b.80.1.3 28029 1adqH 225 8.11e+00 1igtB b.1.1.1 20273 b.1.1.2 21273 1l6rA 227 8.86e+00 c.108.1.10 77768 2apr 325 8.89e+00 2er7E b.50.1.2 26819 1mkfA 382 1.07e+01 b.116.1.1 79232 1k42A 168 1.12e+01 b.18.1.14 72032 1aijH 260 1.17e+01 6prcH b.41.1.1 25466 f.23.10.1 43463 1rzhH 260 1.19e+01 b.41.1.1 98162 f.23.10.1 98163 1cx8B 639 1.20e+01 1cx8B a.48.2.1 17783 c.8.4.1 30764 c.56.5.5 33852 1ehkB 168 1.23e+01 2cuaA b.6.1.2 23041 f.17.2.1 43625 1khbA 625 1.23e+01 c.91.1.1 68606 c.109.1.1 68607 1spuB 727 1.24e+01 1oacA b.30.2.1 24399 d.17.2.1 38025 d.17.2.1 38026 d.82.1.1 40012 1ot1A 686 1.28e+01 b.1.18.2 87392 b.3.1.1 87393 b.71.1.1 87394 c.1.8.1 87395 1p8xA 344 1.28e+01 d.109.1.1 94365 d.109.1.1 94366 d.109.1.1 94367 1azsA 220 1.29e+01 1azsA d.58.29.1 39416 1cx8A 639 1.30e+01 1cx8B a.48.2.1 17782 c.8.4.1 30763 c.56.5.5 33851 1wkrA 340 1.39e+01 b.50.1.2 109395 1culA 217 1.39e+01 1azsA d.58.29.1 39417 1oboA 169 1.41e+01 c.23.5.1 86776 1ospO 257 1.41e+01 1ospO b.76.1.1 27971 1m56B 264 1.43e+01 b.6.1.2 74472 f.17.2.1 74473 1h6uA 308 1.45e+01 b.1.18.15 65688 c.10.2.1 65689 2sqcA 631 1.46e+01 2sqcA a.102.4.2 18854 a.102.4.2 18855 1to4A 156 1.47e+01 b.1.8.1 107162 1eaf 243 1.50e+01 1eaf c.43.1.1 32617 1qovH 260 1.52e+01 6prcH b.41.1.1 25464 f.23.10.1 43457 1e1hA 287 1.52e+01 d.92.1.7 83167 1de4C 640 1.54e+01 1cx8B a.48.2.1 17779 c.8.4.1 30760 c.56.5.5 33848 1oacA 727 1.56e+01 1oacA b.30.2.1 24390 d.17.2.1 38007 d.17.2.1 38008 d.82.1.1 40003 1ft1B 437 1.57e+01 1ft1B a.102.4.3 18867 1sqc 631 1.59e+01 2sqcA a.102.4.2 18858 a.102.4.2 18859 1dim 381 1.61e+01 3sil b.68.1.1 27544 1ollA 188 1.62e+01 b.1.1.4 93313 b.1.1.4 93314 1cjtA 217 1.69e+01 1azsA d.58.29.1 39419 1tdtA 259 1.73e+01 3tdt b.81.1.2 28055 1cxlA 686 1.79e+01 1cxlA b.1.18.2 21829 b.3.1.1 22498 b.71.1.1 27736 c.1.8.1 28723 1d3cA 686 1.81e+01 1cxlA b.1.18.2 21827 b.3.1.1 22496 b.71.1.1 27734 c.1.8.1 28721 2bbkH 355 1.84e+01 2bbkH b.69.2.1 27634 1itkA 731 1.86e+01 a.93.1.3 71417 a.93.1.3 71418 1t5hX 504 1.91e+01 e.23.1.1 106449 1qoiA 177 1.92e+01 2cpl b.62.1.1 27490 1f28A 297 1.97e+01 1bkpA d.117.1.1 59608 1kgqA 274 2.04e+01 b.81.1.2 72447 1jcrB 437 2.08e+01 a.102.4.3 66507 2tdt 274 2.16e+01 3tdt b.81.1.2 28054 1d8dB 437 2.18e+01 1ft1B a.102.4.3 18866 1je0A 236 2.22e+01 c.56.2.1 66581 1d6zA 727 2.25e+01 1oacA b.30.2.1 24394 d.17.2.1 38015 d.17.2.1 38016 d.82.1.1 40007 1k5cA 335 2.26e+01 b.80.1.3 72076 2sil 381 2.32e+01 3sil b.68.1.1 27543 1tikA 213 2.45e+01 c.23.5.3 107003 1ciy 590 2.51e+01 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1as6A 343 2.53e+01 1nif b.6.1.3 23090 b.6.1.3 23091 3tdt 274 2.55e+01 3tdt b.81.1.2 28053 1z41A 338 2.59e+01 1ksiA 642 2.63e+01 1ksiB b.30.2.1 24408 d.17.2.1 38043 d.17.2.1 38044 2madH 373 2.73e+01 2bbkH b.69.2.1 27639 1ksiB 642 2.74e+01 1ksiB b.30.2.1 24409 d.17.2.1 38045 d.17.2.1 38046 1e2tA 284 2.77e+01 1e2tA d.3.1.5 37121 1j9qA 341 2.78e+01 1nif b.6.1.3 62765 b.6.1.3 62766 1z3iX 644 2.80e+01 4sli 679 2.87e+01 2sli b.29.1.9 24275 b.68.1.1 27612 2sli 679 2.88e+01 2sli b.29.1.9 24274 b.68.1.1 27611 1d8hA 311 2.89e+01 1d8iA d.63.1.1 39544 1d8iA 311 2.92e+01 1d8iA d.63.1.1 39541 1zq1A 438 2.93e+01 1pmi 440 3.02e+01 1pmi b.82.1.3 28114 3sil 379 3.03e+01 3sil b.68.1.1 27542 1ai1H 221 3.12e+01 1igtB b.1.1.1 19883 b.1.1.2 20979 1wguA 136 3.16e+01 1as8A 343 3.25e+01 1nif b.6.1.3 23074 b.6.1.3 23075 1vajA 214 3.28e+01 1aim 215 3.32e+01 1cs8A d.3.1.1 37044 1snrA 341 3.32e+01 b.6.1.3 105823 b.6.1.3 105824 1uz8B 212 3.33e+01 b.1.1.1 108168 b.1.1.2 108169 1m2tB 263 3.39e+01 b.42.2.1 84762 b.42.2.1 84763 1et0A 269 3.41e+01 1et0A e.17.1.1 43289 1ziwA 680 3.42e+01 1zpsA 138 3.58e+01 6prcL 273 3.65e+01 6prcL f.26.1.1 43434 1am5 324 3.66e+01 1smrA b.50.1.2 26855 1dxrL 273 3.69e+01 6prcL f.26.1.1 43431 1ymmE 249 3.72e+01 1q9jA 422 3.84e+01 c.43.1.2 104590 c.43.1.2 104591 1dpb 243 3.85e+01 1eaf c.43.1.1 32618 1v54B 227 3.94e+01 b.6.1.2 100322 f.17.2.1 100323 1ld8B 437 3.96e+01 a.102.4.3 73839