# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1n93X	375	8.96e+00		a.206.1.1	91707
1g40A	244	1.01e+01	1e5gA	g.18.1.1	44823
				g.18.1.1	44824
				g.18.1.1	44825
				g.18.1.1	44826
1w2yA	229	1.31e+01		a.204.1.1	109140
1cznA	169	1.73e+01	1rcf	c.23.5.1	31181
1vk1A	242	1.85e+01		d.268.1.2	108634
1p8xA	344	1.88e+01		d.109.1.1	94365
				d.109.1.1	94366
				d.109.1.1	94367
1ofv	169	2.07e+01	1rcf	c.23.5.1	31184
1oboA	169	2.11e+01		c.23.5.1	86776
1bqhG	129	2.41e+01	1cd8	b.1.1.1	19715
1vkrA	125	2.59e+01		c.44.2.1	108689
1jsqA	582	2.62e+01		i.13.1.1	63270
1xm7A	195	2.65e+01			
1ek9A	428	2.77e+01	1ek9A	f.5.1.1	43809
2b5gA	171	2.84e+01			
1p3jA	217	2.99e+01		c.37.1.1	94022
				g.41.2.1	94023
6prcL	273	3.10e+01	6prcL	f.26.1.1	43434
1rt8A	513	3.10e+01		a.40.1.1	105095
1t07A	94	3.13e+01		d.279.1.1	106196
2fug5	207	3.24e+01			
1z2cB	383	3.31e+01			
1dxrL	273	3.37e+01	6prcL	f.26.1.1	43431
2eifA	136	3.56e+01	1bkb	b.34.5.2	24607
				b.40.4.5	25339
1xnpA	202	3.62e+01			
1n3kA	130	3.62e+01		a.77.1.4	79965
1tueB	218	3.76e+01		b.91.1.1	107324
2f1fA	164	3.78e+01			
2cr5A	109	3.78e+01			
1yarO	237	3.86e+01			
1scfA	273	3.92e+01	1exzA	a.26.1.2	16873
1m1jA	491	3.97e+01		h.1.8.1	74369
1wf9A	107	3.98e+01