(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html
Citations (SAM, SAM-T99, HMMs)
- R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
- K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
- A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
Sequence numbers correspond to the following labels:
-
- YGR022C YGR022C SGDID:S0003254, Chr VII from 529251-529580, reverse complement
-
- gi|6321460|ref|NP_011536.1|_1:109 (NC_001139) Hypothetical ORF; Ygr022cp [Saccharomyces cerevisiae]
- gi|1723651sp|P53213|YG1E_YEAST HYPOTHETICAL 11.7 KD PROTEIN IN VMA7-RPS25A INTERGENIC REGION
- gi|2132584|pir||S64313 probable membrane protein YGR022c - yeast (Saccharomyces cerevisiae)
- gi|1322993|emb|CAA97005.1| (Z72807) ORF YGR022c [Saccharomyces cerevisiae]
10 20 30 40 50 60
| | | | | |
1 MDEEESSEDNVDERVSSEELCGKEVKDTEAILGVDKLALLVASVLDVNDSTAESEVMEGAVLDVV
2 MDEEESSEDNVDERVSSEELCGKEVKDTEAILGVDKLALLVASVLDVNDSTAESEVMEGAVLDVV
70 80 90 100
| | | |
1 LLAGTNSCERTLSGSVVNAMRIVLHIDRLEAELFFLVGLQLAIP
2 LLAGTNSCERTLSGSVVNAMRIVLHIDRLEAELFFLVGLQLAIP