# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1in6A 334 1.17e-01 1hqcA a.4.5.11 62601 c.37.1.13 62602 1in4A 334 2.65e-01 1hqcA a.4.5.11 62597 c.37.1.13 62598 1gpmA 525 8.76e-01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1faaA 124 1.10e+00 1erv c.47.1.1 32738 1grj 158 2.67e+00 1grj a.2.1.1 15691 d.26.1.2 38433 1kk1A 410 3.60e+00 1d3bB 91 4.65e+00 1d3bB b.38.1.1 24804 1pot 325 5.13e+00 1pot c.94.1.1 35807 1l0wA 580 5.58e+00 1nddD 76 6.54e+00 1ubi d.15.1.1 37602 1c7nA 399 6.76e+00 1d2fA c.67.1.3 34413 1nddA 76 6.93e+00 1ubi d.15.1.1 37599 1d0yA 761 7.48e+00 1lvk b.34.3.1 24581 c.37.1.9 32178 1c0pA 363 7.58e+00 1an9A c.4.1.2 30647 d.16.1.3 37934 1fts 295 7.75e+00 1ng1 a.24.13.1 16968 c.37.1.10 32279 1bt0A 76 8.05e+00 1ubi d.15.1.1 37607 1ykfA 352 8.14e+00 1pedA b.35.1.2 24757 c.2.1.1 29773 1gzgA 337 8.80e+00 1b4kA 337 9.33e+00 1b4kA c.1.10.3 29184 1lvk 762 9.44e+00 1lvk b.34.3.1 24576 c.37.1.9 32173 1mpgA 282 1.16e+01 1mpgA a.96.1.3 18747 d.129.1.2 41296 1acc 735 1.23e+01 1acc f.11.1.1 43828 1mnd 762 1.26e+01 1lvk b.34.3.1 24591 c.37.1.9 32188 1j83A 180 1.28e+01 b.18.1.12 66430 1vom 762 1.38e+01 1lvk b.34.3.1 24577 c.37.1.9 32174 1qs2A 401 1.58e+01 1qs1A d.166.1.1 42268 d.166.1.1 42269 1knt 58 1.59e+01 1bpi g.8.1.1 44538 1kthA 58 1.60e+01 g.8.1.1 68863 2knt 58 1.60e+01 1bpi g.8.1.1 44537 1qe3A 489 1.67e+01 2bce c.69.1.1 34630 1jjyA 636 1.86e+01 1jjyA e.26.1.2 63141 1fb6A 105 1.87e+01 1thx c.47.1.1 32739 1cjwA 166 1.94e+01 1cjwA d.108.1.1 40818 1thx 115 2.07e+01 1thx c.47.1.1 32732 1jndA 420 2.11e+01 1rcb 129 2.45e+01 1rcb a.26.1.2 16854 1cjcA 460 2.46e+01 1cjcA c.3.1.1 30319 c.4.1.1 30604 2int 129 2.46e+01 1rcb a.26.1.2 16855 1itm 130 2.58e+01 1rcb a.26.1.2 16858 1cnzA 363 2.68e+01 1cnzA c.77.1.1 35061 1hziA 129 2.71e+01 1rcb a.26.1.2 61449 1e8cA 498 2.72e+01 c.98.1.1 59377 c.59.1.1 59378 c.72.2.1 59379 1kevA 351 2.76e+01 1pedA b.35.1.2 24749 c.2.1.1 29765 1ju2A 536 3.07e+01 1b2pA 119 3.07e+01 1b2pA b.78.1.1 27998 3grs 478 3.16e+01 3grs c.3.1.5 30441 c.3.1.5 30442 d.87.1.1 40152 4gr1 478 3.18e+01 3grs c.3.1.5 30461 c.3.1.5 30462 d.87.1.1 40162 1evsA 187 3.22e+01 1evsA a.26.1.1 16845 1i9bA 217 3.28e+01 1i9bA b.96.1.1 62084 1gfsA 321 3.40e+01 c.2.1.2 29811 1bsvA 321 3.51e+01 1bsvA c.2.1.2 29809 1iiwA 232 3.60e+01 c.94.1.1 62461 3sicI 107 3.62e+01 3ssi d.84.1.1 40028 1kuxA 207 3.74e+01 1auyA 189 3.79e+01 1auyA b.10.1.2 23311