# List of top-scoring protein chains for t2k-100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1in6A 334 1.01e-01 1hqcA a.4.5.11 62601 c.37.1.13 62602 1in4A 334 2.04e-01 1hqcA a.4.5.11 62597 c.37.1.13 62598 1grj 158 7.80e-01 1grj a.2.1.1 15691 d.26.1.2 38433 1ykfA 352 1.02e+00 1pedA b.35.1.2 24757 c.2.1.1 29773 1b4kA 337 1.45e+00 1b4kA c.1.10.3 29184 1faaA 124 1.54e+00 1erv c.47.1.1 32738 1gzgA 337 1.78e+00 1fts 295 2.24e+00 1ng1 a.24.13.1 16968 c.37.1.10 32279 1gpmA 525 2.36e+00 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1c7nA 399 2.55e+00 1d2fA c.67.1.3 34413 1d3bB 91 2.94e+00 1d3bB b.38.1.1 24804 1pedA 351 3.28e+00 1pedA b.35.1.2 24753 c.2.1.1 29769 1kevA 351 3.34e+00 1pedA b.35.1.2 24749 c.2.1.1 29765 1l0wA 580 4.15e+00 1c0pA 363 4.46e+00 1an9A c.4.1.2 30647 d.16.1.3 37934 1evsA 187 7.52e+00 1evsA a.26.1.1 16845 1pot 325 8.72e+00 1pot c.94.1.1 35807 1j83A 180 1.21e+01 b.18.1.12 66430 1kk1A 410 1.40e+01 1e8cA 498 1.46e+01 c.98.1.1 59377 c.59.1.1 59378 c.72.2.1 59379 1bt0A 76 1.49e+01 1ubi d.15.1.1 37607 1qs2A 401 1.55e+01 1qs1A d.166.1.1 42268 d.166.1.1 42269 1b2pA 119 1.58e+01 1b2pA b.78.1.1 27998 1nddA 76 1.59e+01 1ubi d.15.1.1 37599 3sicI 107 1.85e+01 3ssi d.84.1.1 40028 1gzqA 300 2.08e+01 1thx 115 2.11e+01 1thx c.47.1.1 32732 1knt 58 2.20e+01 1bpi g.8.1.1 44538 3grs 478 2.22e+01 3grs c.3.1.5 30441 c.3.1.5 30442 d.87.1.1 40152 1kthA 58 2.24e+01 g.8.1.1 68863 2knt 58 2.24e+01 1bpi g.8.1.1 44537 1d0yA 761 2.30e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1ndk 155 2.43e+01 1npk d.58.6.1 39118 1j8mF 297 2.48e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 4gr1 478 2.49e+01 3grs c.3.1.5 30461 c.3.1.5 30462 d.87.1.1 40162 1npk 154 2.54e+01 1npk d.58.6.1 39099 1mpgA 282 2.54e+01 1mpgA a.96.1.3 18747 d.129.1.2 41296 1f3fA 155 2.55e+01 1npk d.58.6.1 39101 1jndA 420 2.58e+01 2sicI 107 2.59e+01 3ssi d.84.1.1 40031 1jykA 254 2.62e+01 c.68.1.13 67458 1nddD 76 2.63e+01 1ubi d.15.1.1 37602 1bdyA 123 2.64e+01 1bdyA b.7.1.1 23190 1h4wA 224 2.69e+01 b.47.1.2 65622 1httA 423 3.02e+01 1adjA c.51.1.1 33178 d.104.1.1 40727 1vom 762 3.04e+01 1lvk b.34.3.1 24577 c.37.1.9 32174 2dtr 226 3.07e+01 1bi0 a.4.5.24 16193 a.76.1.1 18399 b.34.1.2 24450 1lvk 762 3.12e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1mnd 762 3.27e+01 1lvk b.34.3.1 24591 c.37.1.9 32188 1itm 130 3.45e+01 1rcb a.26.1.2 16858 1iciA 256 3.49e+01 1iciA c.31.1.5 62266 1fo1A 271 3.56e+01 1fo1A c.10.2.3 30869 d.58.7.2 39213 1e58A 249 3.63e+01 1qhfA c.60.1.1 59262 1bbn 133 3.70e+01 1rcb a.26.1.2 16861 1rcb 129 3.72e+01 1rcb a.26.1.2 16854 1ituA 369 3.81e+01 1agx 331 3.86e+01 4pgaA c.88.1.1 35564 1jygA 69 4.00e+01 a.60.11.1 67457