# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1in6A 334 2.46e-01 1hqcA a.4.5.11 62601 c.37.1.13 62602 1in4A 334 5.47e-01 1hqcA a.4.5.11 62597 c.37.1.13 62598 1gpmA 525 5.92e-01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1c7nA 399 2.40e+00 1d2fA c.67.1.3 34413 1faaA 124 2.55e+00 1erv c.47.1.1 32738 1c0pA 363 2.82e+00 1an9A c.4.1.2 30647 d.16.1.3 37934 1l0wA 580 2.88e+00 1fts 295 4.07e+00 1ng1 a.24.13.1 16968 c.37.1.10 32279 1gzgA 337 5.52e+00 1grj 158 5.88e+00 1grj a.2.1.1 15691 d.26.1.2 38433 1b4kA 337 6.34e+00 1b4kA c.1.10.3 29184 1pot 325 7.62e+00 1pot c.94.1.1 35807 1kk1A 410 8.21e+00 1evsA 187 9.68e+00 1evsA a.26.1.1 16845 1d0yA 761 1.01e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1ykfA 352 1.02e+01 1pedA b.35.1.2 24757 c.2.1.1 29773 1lvk 762 1.20e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1nddA 76 1.29e+01 1ubi d.15.1.1 37599 1mpgA 282 1.30e+01 1mpgA a.96.1.3 18747 d.129.1.2 41296 1bt0A 76 1.34e+01 1ubi d.15.1.1 37607 1vom 762 1.36e+01 1lvk b.34.3.1 24577 c.37.1.9 32174 1d3bB 91 1.54e+01 1d3bB b.38.1.1 24804 1mnd 762 1.61e+01 1lvk b.34.3.1 24591 c.37.1.9 32188 1knt 58 1.93e+01 1bpi g.8.1.1 44538 1kthA 58 1.94e+01 g.8.1.1 68863 2knt 58 1.94e+01 1bpi g.8.1.1 44537 1h4wA 224 1.99e+01 b.47.1.2 65622 1e8cA 498 2.04e+01 c.98.1.1 59377 c.59.1.1 59378 c.72.2.1 59379 1qs2A 401 2.06e+01 1qs1A d.166.1.1 42268 d.166.1.1 42269 1qe3A 489 2.15e+01 2bce c.69.1.1 34630 1igl 67 2.20e+01 1zeiA g.1.1.1 43993 1j83A 180 2.24e+01 b.18.1.12 66430 1cnzA 363 2.28e+01 1cnzA c.77.1.1 35061 1b2pA 119 2.40e+01 1b2pA b.78.1.1 27998 1nddD 76 2.59e+01 1ubi d.15.1.1 37602 1jenA 267 2.90e+01 1jenA 1kevA 351 2.95e+01 1pedA b.35.1.2 24749 c.2.1.1 29765 1itm 130 2.98e+01 1rcb a.26.1.2 16858 2dtr 226 3.21e+01 1bi0 a.4.5.24 16193 a.76.1.1 18399 b.34.1.2 24450 1gzqA 300 3.28e+01 1pedA 351 3.42e+01 1pedA b.35.1.2 24753 c.2.1.1 29769 3sicI 107 3.47e+01 3ssi d.84.1.1 40028 2int 129 3.51e+01 1rcb a.26.1.2 16855 1bbn 133 3.68e+01 1rcb a.26.1.2 16861 1bi0 226 3.71e+01 1bi0 a.4.5.24 16202 a.76.1.1 18408 b.34.1.2 24453 1rcb 129 3.74e+01 1rcb a.26.1.2 16854 1cjcA 460 3.92e+01 1cjcA c.3.1.1 30319 c.4.1.1 30604 1thx 115 3.93e+01 1thx c.47.1.1 32732