# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1in6A 334 1.77e-01 1hqcA a.4.5.11 62601 c.37.1.13 62602 1gpmA 525 2.46e-01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1in4A 334 4.00e-01 1hqcA a.4.5.11 62597 c.37.1.13 62598 1l0wA 580 1.03e+00 1c7nA 399 3.48e+00 1d2fA c.67.1.3 34413 1pot 325 3.77e+00 1pot c.94.1.1 35807 1fts 295 4.01e+00 1ng1 a.24.13.1 16968 c.37.1.10 32279 1faaA 124 4.20e+00 1erv c.47.1.1 32738 1gzgA 337 4.21e+00 1cnzA 363 4.72e+00 1cnzA c.77.1.1 35061 1b4kA 337 4.74e+00 1b4kA c.1.10.3 29184 1ykfA 352 6.12e+00 1pedA b.35.1.2 24757 c.2.1.1 29773 1iq4A 179 6.71e+00 1iq4A d.77.1.1 62641 1mpgA 282 6.77e+00 1mpgA a.96.1.3 18747 d.129.1.2 41296 1d0yA 761 8.85e+00 1lvk b.34.3.1 24581 c.37.1.9 32178 1c0pA 363 9.15e+00 1an9A c.4.1.2 30647 d.16.1.3 37934 1evsA 187 9.79e+00 1evsA a.26.1.1 16845 1lvk 762 1.09e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1itm 130 1.10e+01 1rcb a.26.1.2 16858 1bbn 133 1.13e+01 1rcb a.26.1.2 16861 1grj 158 1.19e+01 1grj a.2.1.1 15691 d.26.1.2 38433 1rcb 129 1.20e+01 1rcb a.26.1.2 16854 1jygA 69 1.31e+01 a.60.11.1 67457 2int 129 1.37e+01 1rcb a.26.1.2 16855 1hziA 129 1.42e+01 1rcb a.26.1.2 61449 1h4wA 224 1.49e+01 b.47.1.2 65622 1qe3A 489 1.57e+01 2bce c.69.1.1 34630 1mnd 762 1.59e+01 1lvk b.34.3.1 24591 c.37.1.9 32188 1d3bB 91 1.59e+01 1d3bB b.38.1.1 24804 1cm7A 363 1.63e+01 1cnzA c.77.1.1 35063 1kk1A 410 1.64e+01 1vom 762 1.74e+01 1lvk b.34.3.1 24577 c.37.1.9 32174 1jykA 254 1.78e+01 c.68.1.13 67458 1nddA 76 1.94e+01 1ubi d.15.1.1 37599 1ggwA 140 2.06e+01 1ggwA a.39.1.5 60490 1a6q 382 2.18e+01 1a6q d.158.1.1 42063 1itf 165 2.20e+01 1b5l a.26.1.3 16899 2sniI 83 2.21e+01 2sniI d.40.1.1 38573 1bt0A 76 2.23e+01 1ubi d.15.1.1 37607 1nddD 76 2.25e+01 1ubi d.15.1.1 37602 1ayfB 105 2.28e+01 1ayfA d.15.4.1 37685 1qs2A 401 2.37e+01 1qs1A d.166.1.1 42268 d.166.1.1 42269 2olbA 517 2.44e+01 1jevA c.94.1.1 35721 1jevA 517 2.60e+01 1jevA c.94.1.1 35720 1ayfA 105 2.71e+01 1ayfA d.15.4.1 37684 1ii5A 233 2.72e+01 c.94.1.1 62412 2lfb 100 2.73e+01 1lfb a.4.1.1 15990 1iiwA 232 2.81e+01 c.94.1.1 62461 1b3tA 147 2.87e+01 1b3tA d.58.8.1 39228 1kevA 351 2.90e+01 1pedA b.35.1.2 24749 c.2.1.1 29765 1jndA 420 2.92e+01 1e8cA 498 3.00e+01 c.98.1.1 59377 c.59.1.1 59378 c.72.2.1 59379 1pfo 500 3.04e+01 1pfo f.9.1.1 43826 1jetA 517 3.20e+01 1jevA c.94.1.1 35718 1lw6I 64 3.21e+01 1pedA 351 3.34e+01 1pedA b.35.1.2 24753 c.2.1.1 29769 1hznA 31 3.36e+01 j.82.1.1 61454 1k3zD 282 3.52e+01 2cmkA 227 3.55e+01 1ckeA c.37.1.1 31847 1eqfA 280 3.69e+01 1eqfA a.29.2.1 16972 a.29.2.1 16973 1bea 127 3.72e+01 1bea a.52.1.2 17826 1bwsA 321 3.84e+01 1bsvA c.2.1.2 29812 1go4E 100 3.89e+01