# List of top-scoring protein chains for t2k-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1in6A 334 5.37e-02 1hqcA a.4.5.11 62601 c.37.1.13 62602 1in4A 334 9.36e-02 1hqcA a.4.5.11 62597 c.37.1.13 62598 1faaA 124 7.58e-01 1erv c.47.1.1 32738 1c7nA 399 1.03e+00 1d2fA c.67.1.3 34413 1fts 295 1.47e+00 1ng1 a.24.13.1 16968 c.37.1.10 32279 1bdyA 123 1.49e+00 1bdyA b.7.1.1 23190 1d3bB 91 1.49e+00 1d3bB b.38.1.1 24804 1c0pA 363 1.70e+00 1an9A c.4.1.2 30647 d.16.1.3 37934 1gpmA 525 2.07e+00 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1qe3A 489 2.48e+00 2bce c.69.1.1 34630 1grj 158 3.96e+00 1grj a.2.1.1 15691 d.26.1.2 38433 1h6uA 308 3.96e+00 b.1.1.6 65688 c.10.2.1 65689 1cnzA 363 4.52e+00 1cnzA c.77.1.1 35061 1l0wA 580 4.60e+00 1jjyA 636 5.72e+00 1jjyA e.26.1.2 63141 3sicI 107 6.62e+00 3ssi d.84.1.1 40028 1acc 735 6.80e+00 1acc f.11.1.1 43828 1fo1A 271 7.10e+00 1fo1A c.10.2.3 30869 d.58.7.2 39213 3ssi 113 7.14e+00 3ssi d.84.1.1 40032 1mpgA 282 7.46e+00 1mpgA a.96.1.3 18747 d.129.1.2 41296 1ykfA 352 7.70e+00 1pedA b.35.1.2 24757 c.2.1.1 29773 2sicI 107 8.21e+00 3ssi d.84.1.1 40031 1hziA 129 9.42e+00 1rcb a.26.1.2 61449 1evsA 187 9.65e+00 1evsA a.26.1.1 16845 1httA 423 1.01e+01 1adjA c.51.1.1 33178 d.104.1.1 40727 1jgtA 513 1.08e+01 c.26.2.1 66684 d.153.1.1 66685 1kmnD 424 1.11e+01 1adjA c.51.1.1 33185 d.104.1.1 40734 1rcb 129 1.13e+01 1rcb a.26.1.2 16854 2int 129 1.14e+01 1rcb a.26.1.2 16855 1ckeA 227 1.16e+01 1ckeA c.37.1.1 31846 1d4tA 104 1.20e+01 1d4tA d.93.1.1 40537 1kdoA 227 1.24e+01 c.37.1.1 68478 1kmmA 424 1.34e+01 1adjA c.51.1.1 33174 d.104.1.1 40723 1vom 762 1.38e+01 1lvk b.34.3.1 24577 c.37.1.9 32174 1ixh 321 1.42e+01 1ixh c.94.1.1 35761 1lvk 762 1.44e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1h61A 364 1.45e+01 1oyc c.1.4.1 60657 1d0yA 761 1.46e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1nsf 273 1.46e+01 1d2nA c.37.1.13 32429 1j83A 180 1.47e+01 b.18.1.12 66430 1kk1A 410 1.47e+01 2cmkA 227 1.50e+01 1ckeA c.37.1.1 31847 1ggwA 140 1.56e+01 1ggwA a.39.1.5 60490 1hms 132 1.59e+01 1hmt b.60.1.2 27168 1d2nA 272 1.60e+01 1d2nA c.37.1.13 32428 1cm7A 363 1.68e+01 1cnzA c.77.1.1 35063 1hmt 132 1.70e+01 1hmt b.60.1.2 27169 1hmr 132 1.72e+01 1hmt b.60.1.2 27170 1b2pA 119 1.79e+01 1b2pA b.78.1.1 27998 1nddA 76 1.82e+01 1ubi d.15.1.1 37599 1g291 372 1.84e+01 1g291 1ka6A 128 1.86e+01 d.93.1.1 68370 1cjcA 460 1.89e+01 1cjcA c.3.1.1 30319 c.4.1.1 30604 1jndA 420 1.89e+01 1hg8A 349 1.90e+01 b.80.1.3 65830 1gzgA 337 2.00e+01 1e6uA 321 2.01e+01 1bsvA c.2.1.2 29805 1dtjA 76 2.02e+01 1dt4A d.51.1.1 38800 1pbp 321 2.05e+01 1ixh c.94.1.1 35768 1thx 115 2.08e+01 1thx c.47.1.1 32732 1igl 67 2.13e+01 1zeiA g.1.1.1 43993 1bbn 133 2.13e+01 1rcb a.26.1.2 16861 1e8cA 498 2.30e+01 c.98.1.1 59377 c.59.1.1 59378 c.72.2.1 59379 1taq 832 2.37e+01 1taq a.60.7.1 18082 c.53.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 1itm 130 2.38e+01 1rcb a.26.1.2 16858 1c02A 166 2.41e+01 1qspA a.24.10.2 16633 1qspA 165 2.42e+01 1qspA a.24.10.2 16639 1fb6A 105 2.45e+01 1thx c.47.1.1 32739 1lktA 104 2.45e+01 1lktA b.90.1.1 28398 1mnd 762 2.47e+01 1lvk b.34.3.1 24591 c.37.1.9 32188 1czfA 362 2.50e+01 1czfA b.80.1.3 28031 1nddD 76 2.53e+01 1ubi d.15.1.1 37602 1ii5A 233 2.54e+01 c.94.1.1 62412 1bsvA 321 2.56e+01 1bsvA c.2.1.2 29809 1hznA 31 2.56e+01 j.82.1.1 61454 1buoA 121 2.57e+01 1buoA d.42.1.1 38631 1iiwA 232 2.57e+01 c.94.1.1 62461 1ayfB 105 2.60e+01 1ayfA d.15.4.1 37685 1f2tB 148 2.70e+01 1f2tB 1qlaB 239 2.81e+01 1qlaB a.1.2.1 15679 d.15.4.2 37707 1pfo 500 2.88e+01 1pfo f.9.1.1 43826 1pot 325 3.07e+01 1pot c.94.1.1 35807 1b4kA 337 3.08e+01 1b4kA c.1.10.3 29184 1h4wA 224 3.16e+01 b.47.1.2 65622 1f0kA 364 3.23e+01 1f0kA c.87.1.2 35465 1a0fA 201 3.28e+01 1a0fA a.45.1.1 17737 c.47.1.5 33031 3grs 478 3.34e+01 3grs c.3.1.5 30441 c.3.1.5 30442 d.87.1.1 40152 1gfsA 321 3.39e+01 c.2.1.2 29811 1bi0 226 3.44e+01 1bi0 a.4.5.24 16202 a.76.1.1 18408 b.34.1.2 24453 1e3yA 104 3.65e+01 1fadA a.77.1.1 18426 1zfo 31 3.70e+01 g.39.1.4 45149 1bt0A 76 3.70e+01 1ubi d.15.1.1 37607 1dyqA 234 3.70e+01 3seb b.40.2.2 59140 d.15.6.1 59141 1ayfA 105 3.78e+01 1ayfA d.15.4.1 37684 1jenA 267 3.82e+01 1jenA 1j5wA 298 3.83e+01 1al01 152 3.98e+01 1cd31