# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lfpA 249 1.31e-45 e.39.1.1 73885 1konA 249 3.12e-42 e.39.1.1 72823 1mw7A 240 4.63e-35 e.39.1.1 79557 1l6rA 227 3.27e-02 c.108.1.10 77768 4pfk 319 5.78e-01 3pfk c.89.1.1 35582 1b4aA 149 6.00e-01 1b4aA a.4.5.3 16088 d.74.2.1 39721 1o7fA 469 8.32e-01 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1ad3A 452 1.10e+00 1ad3A c.82.1.1 35335 2ng1 293 1.15e+00 1ng1 a.24.13.1 16962 c.37.1.10 32273 1pqsA 77 1.20e+00 3pfk 319 1.26e+00 3pfk c.89.1.1 35581 1j5yA 187 1.39e+00 a.4.5.1 71592 d.94.2.1 71593 6pfkA 319 1.41e+00 3pfk c.89.1.1 35583 1jceA 344 1.43e+00 c.55.1.1 62876 c.55.1.1 62877 1jcfA 344 1.44e+00 c.55.1.1 62878 c.55.1.1 62879 1pcxA 810 1.69e+00 1fg7A 356 2.32e+00 1gewA c.67.1.1 59819 1l7mA 211 2.42e+00 c.108.1.4 73664 1hfc 169 2.63e+00 1hfc d.92.1.11 40335 1gewA 356 2.76e+00 1gewA c.67.1.1 60470 1hfs 160 2.80e+00 1hfc d.92.1.11 40370 1f5sA 211 3.08e+00 1f5sA c.108.1.4 59656 1j97A 211 3.08e+00 1f5sA c.108.1.4 62753 1a8q 274 3.47e+00 1brt c.69.1.12 34702 1dpgA 485 3.54e+00 1dpgA c.2.1.3 30074 d.81.1.5 39989 1h3nA 878 3.73e+00 a.27.1.1 76641 b.51.1.1 76642 c.26.1.1 76643 1hy7A 173 3.93e+00 d.92.1.11 65957 1f1eA 154 3.93e+00 a.22.1.2 64927 1pytA 94 3.94e+00 1pytA d.58.3.1 39064 1pea 385 4.03e+00 1pea c.93.1.1 35662 1j8yF 297 4.57e+00 1ng1 a.24.13.1 62747 c.37.1.10 62748 1gtdA 85 4.74e+00 d.58.45.1 76344 1j8mF 297 4.88e+00 1ng1 a.24.13.1 62742 c.37.1.10 62743 1i19A 561 4.89e+00 1i19A d.58.32.3 61522 d.145.1.1 61523 3sxlA 184 5.22e+00 1b7fA d.58.7.1 39173 d.58.7.1 39174 1k0wA 231 5.27e+00 c.74.1.1 77220 1jdiA 231 5.30e+00 c.74.1.1 66551 1o0pA 104 5.94e+00 1phnB 172 5.96e+00 1qgwC a.1.1.3 15642 1a2zA 220 6.49e+00 1a2zA c.56.4.1 33794 1edoA 244 6.53e+00 1ybvA c.2.1.2 29896 1gqyA 475 6.73e+00 1ls1A 295 6.89e+00 a.24.13.1 78170 c.37.1.10 78171 1ng1 294 6.97e+00 1ng1 a.24.13.1 16961 c.37.1.10 32272 2dpg 485 6.97e+00 1dpgA c.2.1.3 30076 d.81.1.5 39991 1aw0 72 7.08e+00 1aw0 d.58.17.1 39342 1p3dA 475 7.94e+00 1ibrB 462 8.15e+00 1qgrA a.118.1.1 19120 1brt 277 8.38e+00 1brt c.69.1.12 34699 1afi 72 8.45e+00 1aw0 d.58.17.1 39339 1gx1A 160 8.89e+00 d.79.5.1 70675 1pta 318 9.05e+00 1pscA c.1.9.3 29064 1hl6A 165 9.24e+00 1qm9A 198 9.24e+00 1qm9A d.58.7.1 39207 d.58.7.1 39208 1jpnA 296 9.35e+00 a.24.13.1 67039 c.37.1.10 67040 1opjA 293 9.43e+00 1h6hA 143 1.01e+01 d.189.1.1 65681 1ccwA 137 1.01e+01 1be1 c.23.6.1 31238 1dmlA 319 1.02e+01 1dmlA d.131.1.2 41380 d.131.1.2 41381 1pieA 419 1.05e+01 1jy8A 159 1.07e+01 d.79.5.1 67452 1kxlA 199 1.24e+01 b.40.4.3 73155 1cxvA 164 1.27e+01 1ck7A d.92.1.11 40404 1om0A 274 1.28e+01 1d1rA 116 1.30e+01 1d1rA d.64.1.1 39548 1jxhA 288 1.30e+01 c.72.1.2 67415 1n2zA 245 1.31e+01 c.92.2.2 79865 2hqi 72 1.32e+01 1aw0 d.58.17.1 39340 1qd9A 124 1.37e+01 1qu9A d.79.1.1 39758 1izcA 339 1.39e+01 1bh5A 183 1.41e+01 1qipA d.32.1.1 38476 1broA 277 1.43e+01 1brt c.69.1.12 34700 1i1gA 141 1.59e+01 a.4.5.32 65982 d.58.4.2 65983 1b4bA 71 1.61e+01 1b4aA d.74.2.1 39718 1ktaA 365 1.63e+01 e.17.1.1 77533 1erzA 303 1.65e+01 1erzA d.160.1.2 59498 1oo0B 110 1.68e+01 1jboB 172 1.68e+01 1ihgA 370 1.68e+01 2cpl a.118.8.1 62380 b.62.1.1 62381 1ktpB 172 1.69e+01 a.1.1.3 72991 1pmaA 233 1.71e+01 1pmaA d.153.1.4 41918 1o5iA 249 1.77e+01 1b8aA 438 1.80e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1a8y 367 1.80e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1fxd 58 1.85e+01 1fxd d.58.1.1 38941 1efuB 282 1.86e+01 1efuB a.5.2.2 58975 d.43.1.1 58976 d.43.1.1 38677 1khbA 625 1.92e+01 c.91.1.1 68606 c.109.1.1 68607 1e0tA 470 1.94e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1oruA 195 1.95e+01 1k7yA 577 2.01e+01 a.46.1.1 68272 c.23.6.1 68273 d.173.1.1 68274 1dkuA 317 2.09e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1g7sA 594 2.11e+01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1ekfA 365 2.14e+01 1ekfA e.17.1.1 59445 1fgkA 310 2.14e+01 1fgkA d.144.1.2 41693 1ao0A 459 2.14e+01 1ecfB c.61.1.1 34049 d.153.1.1 41816 1pdz 434 2.16e+01 4enl c.1.11.1 29215 d.54.1.1 38859 1dqeA 137 2.16e+01 1dqeA a.39.2.1 17388 1kzyC 259 2.17e+01 c.15.1.4 73383 c.15.1.4 73384 1g7rA 594 2.17e+01 1g7rA b.43.3.1 25716 b.43.3.1 25717 c.20.1.1 31034 c.37.1.8 32149 1be1 137 2.19e+01 1be1 c.23.6.1 31237 1liuA 528 2.24e+01 b.58.1.1 77970 c.1.12.1 77971 c.49.1.1 77972 1p35A 299 2.26e+01 1p35A b.28.1.1 23925 1l1jA 239 2.26e+01 1jx6A 342 2.34e+01 c.93.1.1 67406 1hruA 188 2.36e+01 1hruA d.115.1.1 40926 7reqA 727 2.39e+01 1reqA c.1.19.1 29616 c.23.6.1 31243 5reqA 727 2.39e+01 1reqA c.1.19.1 29632 c.23.6.1 31259 1mucA 373 2.55e+01 1mucA c.1.11.2 29236 d.54.1.1 38880 1bmtA 246 2.59e+01 1bmtA a.46.1.1 17757 c.23.6.1 31235 1bjt 793 2.65e+01 1bjt e.11.1.1 43249 1b33N 67 2.66e+01 1b33N d.30.1.1 38459 1o54A 277 2.68e+01 1a98A 152 2.68e+01 1nulA c.61.1.1 34021 1fjgT 106 2.71e+01 1fjfT a.7.6.1 16338 1jkeA 145 2.79e+01 c.110.1.1 66791 2glsA 470 2.83e+01 1lgr d.15.9.1 37851 d.128.1.1 41181 1exmA 405 2.87e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 2gdm 153 2.92e+01 2gdm a.1.1.2 15212 1gdj 153 2.93e+01 2gdm a.1.1.2 15213 1lh1 153 2.94e+01 2gdm a.1.1.2 15222 2lh2 153 2.94e+01 2gdm a.1.1.2 15220 1pjbA 361 2.95e+01 1sayA c.2.1.4 30103 c.23.12.2 31363 1o20A 427 3.00e+01 1e3oC 160 3.02e+01 1au7A a.4.1.1 59197 a.35.1.1 59198 1pjcA 361 3.07e+01 1sayA c.2.1.4 30101 c.23.12.2 31361 1psdA 409 3.09e+01 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 1e9lA 377 3.17e+01 1e9lA c.1.8.5 59395 d.26.3.1 59396 1ls8A 142 3.23e+01 a.39.2.1 78176 1oejA 193 3.24e+01 1g7tA 594 3.25e+01 1g7rA b.43.3.1 25714 b.43.3.1 25715 c.20.1.1 31033 c.37.1.8 32148 1g5qA 181 3.25e+01 1g5qA c.34.1.1 60288 1b7fA 168 3.27e+01 1b7fA d.58.7.1 39169 d.58.7.1 39170 1sayA 361 3.29e+01 1sayA c.2.1.4 30102 c.23.12.2 31362 1ho1A 242 3.30e+01 1ho1A c.1.24.1 61097 1hf2A 210 3.30e+01 1hf2A b.80.3.1 60992 c.102.1.1 60993 1fbnA 230 3.33e+01 1fbnA c.66.1.3 34181 1db3A 372 3.34e+01 1db3A c.2.1.2 29813 1qgrA 876 3.40e+01 1qgrA a.118.1.1 19119 1q6aA 107 3.47e+01 1eriA 276 3.49e+01 1ckqA c.52.1.1 33231 1n6eA 1071 3.50e+01 b.36.1.3 80149 b.68.7.1 80150 b.69.9.1 80151 c.14.1.2 80152 1mz4A 137 3.50e+01 1eqcA 394 3.51e+01 1cz1A c.1.8.3 28811 1cz1A 394 3.54e+01 1cz1A c.1.8.3 28839 1reqA 727 3.58e+01 1reqA c.1.19.1 29620 c.23.6.1 31247 1a58 177 3.65e+01 2cpl b.62.1.1 27495 1kskA 234 3.66e+01 d.58.35.3 72918 d.58.35.3 72919 d.66.1.5 72920 1oniA 137 3.69e+01 1ekyA 129 3.69e+01 1cpq i.11.1.1 46012 1lvmA 229 3.71e+01 b.47.1.3 78243 1ygs 234 3.74e+01 1ygs b.26.1.1 23907 1bvoA 175 3.75e+01 1a3qA b.2.5.3 22457 1k3sA 113 3.81e+01 d.198.1.1 68120 1t7pA 698 3.82e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1io1A 398 3.83e+01 1io1A e.32.1.1 62611 1qipA 183 3.83e+01 1qipA d.32.1.1 38470 1kw3B 292 3.84e+01 d.32.1.3 77549 d.32.1.3 77550 1lfo 128 3.89e+01 1hmt b.60.1.2 27223 1ja9A 274 3.93e+01 c.2.1.2 62817 1igs 248 3.93e+01 1a53 c.1.2.4 28565