# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lfpA 249 6.24e-37 e.39.1.1 73885 1konA 249 8.64e-34 e.39.1.1 72823 1mw7A 240 1.68e-28 e.39.1.1 79557 1p1lA 102 4.04e-01 1h6hA 143 7.50e-01 d.189.1.1 65681 1pytA 94 9.07e-01 1pytA d.58.3.1 39064 1im8A 244 1.67e+00 c.66.1.14 66212 1bvoA 175 1.92e+00 1a3qA b.2.5.3 22457 1kllA 130 2.30e+00 d.32.1.2 72720 1eziA 228 2.89e+00 1eyrA c.68.1.3 34512 1cii 602 5.86e+00 1cii f.1.1.1 43381 h.4.3.1 45787 1eqfA 280 6.41e+00 1eqfA a.29.2.1 16972 a.29.2.1 16973 1nzaA 103 6.50e+00 1f9zA 135 6.92e+00 1qipA d.32.1.1 38484 1b4fA 82 7.09e+00 1b4fA a.60.1.2 17934 1fa8A 135 7.51e+00 1qipA d.32.1.1 38486 1h75A 81 7.68e+00 1h75A c.47.1.1 60716 1orjA 130 8.02e+00 1hl6A 165 8.62e+00 1gky 187 8.88e+00 1gky c.37.1.1 31839 1bg7 176 9.20e+00 2fha a.25.1.1 16686 1o0pA 104 9.94e+00 1b4fG 82 1.04e+01 1b4fA a.60.1.2 17940 1f0mA 82 1.10e+01 1b4fA a.60.1.2 17942 1ecsA 126 1.17e+01 1ecsA d.32.1.2 59407 1io1A 398 1.19e+01 1io1A e.32.1.1 62611 1kr4A 125 1.21e+01 d.58.5.2 72889 1pba 81 1.22e+01 1pytA d.58.3.1 39067 1ex7A 186 1.35e+01 1gky c.37.1.1 59537 1h09A 338 1.42e+01 1vpc 45 1.48e+01 1vpc j.11.1.1 46138 1kjwA 295 1.49e+01 b.34.2.1 68643 c.37.1.1 68644 1edoA 244 1.50e+01 1ybvA c.2.1.2 29896 1fu1B 203 1.63e+01 1fu1B b.59.1.1 27077 h.1.11.1 45631 1udh 244 1.76e+01 3eugA c.18.1.1 31015 1tcrA 202 1.79e+01 1tcrA b.1.1.1 20605 b.1.1.2 21549 1ji0A 240 1.92e+01 c.37.1.12 71665 1dq3A 454 1.94e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1d9cA 121 2.08e+01 1d9cA a.26.1.3 16901 1udg 244 2.10e+01 3eugA c.18.1.1 31016 1jc4A 148 2.11e+01 1jc4A d.32.1.4 62863 1cmxA 236 2.22e+01 1uch d.3.1.6 37130 1nhkL 144 2.26e+01 1npk d.58.6.1 39142 1jbaA 204 2.31e+01 1rec a.39.1.5 17330 1ewjA 126 2.31e+01 1ecsA d.32.1.2 59526 1cawB 184 2.33e+01 1caxB b.82.1.2 28113 1bh5A 183 2.37e+01 1qipA d.32.1.1 38476 1zrn 232 2.47e+01 1qq5A c.108.1.1 43323 1i1gA 141 2.50e+01 a.4.5.32 65982 d.58.4.2 65983 1aew 174 2.53e+01 2fha a.25.1.1 16676 1fu1A 203 2.58e+01 1fu1B b.59.1.1 27076 h.1.11.1 45630 1neq 74 2.63e+01 1neq a.35.1.2 17063 1lb3A 182 2.66e+01 a.25.1.1 77873 1prxB 224 2.67e+01 1prxA c.47.1.10 33077 1h96A 182 2.69e+01 2fha a.25.1.1 60811 1eesA 178 2.81e+01 1eesA c.37.1.8 32073 1mwyA 73 2.84e+01 d.58.17.1 79616 1qm9A 198 2.88e+01 1qm9A d.58.7.1 39207 d.58.7.1 39208 1e79H 146 2.89e+01 1e79H a.2.10.1 15721 b.93.1.1 28438 1aye 401 2.90e+01 1aye c.56.5.1 33824 d.58.3.1 39065 1qcwA 410 2.96e+01 1gox c.1.4.1 28622 1fjeB 175 2.99e+01 1fj7A d.58.7.1 39210 d.58.7.1 39211 1oo0B 110 3.02e+01 1dz3A 130 3.11e+01 1dz3A c.23.1.1 31105 1ltdA 506 3.11e+01 1gox c.1.4.1 28618 d.120.1.1 41086 1j97A 211 3.15e+01 1f5sA c.108.1.4 62753 1m2kA 249 3.16e+01 1gcf 109 3.18e+01 1cto b.1.2.1 22053 1gqeA 365 3.19e+01 e.38.1.1 70351 1cto 109 3.22e+01 1cto b.1.2.1 22054 1prtA 234 3.28e+01 1bcpA d.166.1.1 42253 1ffkP 84 3.29e+01 1ffkP d.12.1.1 37493 1ptoA 244 3.35e+01 1bcpA d.166.1.1 42257 1p4qA 52 3.37e+01 2occH 85 3.42e+01 2occH a.51.1.1 17796 1whsB 153 3.45e+01 1whtB 1whtB 153 3.46e+01 1whtB 1gxyA 226 3.47e+01 d.166.1.3 76380 1p35A 299 3.50e+01 1p35A b.28.1.1 23925 1pqsA 77 3.54e+01 1caxB 184 3.54e+01 1caxB b.82.1.2 28105 1bcsB 160 3.69e+01 1whtB 1a8p 258 3.70e+01 1fdr b.43.4.2 25654 c.25.1.1 31544 1kbjA 412 3.71e+01 c.1.4.1 72280 1cauB 184 3.72e+01 1caxB b.82.1.2 28103 1kyoD 248 3.83e+01 a.3.1.3 73254 f.23.11.1 73255