SAM_T02 Results for YGR018C (YGR018C)

YGR018C (YGR018C) SGDID:S0003250, Chr VII from 524359-524688, reverse complement

Description Link to file Date
Inputs
Submitted sequence(s) YGR018C.a2m 2002 Nov 3 7:05:06
SAM_T02 multiple alignment in a2m format YGR018C.t2k.a2m.gz 2002 Nov 3 7:10:36
SAM_T02 multiple alignment in pretty html format YGR018C.t2k.pa.html 2002 Nov 3 7:10:36
SAM_T02 target hidden Markov model YGR018C.t2k-w0.5.mod 2002 Nov 3 7:10:38
SAM_T02 multiple alignment in sequence logo format YGR018C.t2k.w0.5-logo.eps 2002 Nov 12 4:23:28
Secondary Structure Prediction
Str structure prediction RDB format YGR018C.t2k.str.rdb 2002 Nov 3 7:10:38
Str structure prediction sequence format YGR018C.t2k.str.seq 2002 Nov 3 7:10:38
Str structure prediction in sequence logo format YGR018C.t2k.str-logo.eps 2002 Nov 3 7:10:39
DSSP EBGHSTL structure prediction RDB format YGR018C.t2k.dssp-ebghstl.rdb 2002 Nov 3 7:10:39
DSSP EBGHSTL structure prediction sequence format YGR018C.t2k.dssp-ebghstl.seq 2002 Nov 3 7:10:39
DSSP EBGHSTL structure prediction in sequence logo format YGR018C.t2k.dssp-ebghstl-logo.eps 2002 Nov 3 7:10:40
Stride EBGHTL structure prediction RDB format YGR018C.t2k.stride-ebghtl.rdb 2002 Nov 3 7:10:40
Stride EBGHTL structure prediction sequence format YGR018C.t2k.stride-ebghtl.seq 2002 Nov 3 7:10:40
Stride EBGHTL structure prediction in sequence logo format YGR018C.t2k.stride-ebghtl-logo.eps 2002 Nov 3 7:10:40
Alpha angle prediction RDB format YGR018C.t2k.alpha.rdb 2002 Nov 3 7:10:41
Alpha angle prediction sequence format YGR018C.t2k.alpha.seq 2002 Nov 3 7:10:41
Alpha angle prediction in sequence logo format YGR018C.t2k.alpha-logo.eps 2002 Nov 3 7:10:41
DSSP 3-value prediction RDB format YGR018C.t2k.dssp-ehl2.rdb 2002 Nov 3 7:10:41
DSSP-EHL2 structure prediction CASP format YGR018C.t2k.dssp-ehl2 2002 Nov 3 7:10:41
DSSP 3-value prediction in sequence logo format YGR018C.t2k.dssp-ehl2-logo.eps 2002 Nov 3 7:10:42
Target model scores
Annotated amino acid single-track target model scores of PDB YGR018C.t2k-w0.5-scores.html 2002 Nov 3 7:13:32
Annotated amino acid/100-30-str two-track target model scores YGR018C.t2k-100-30-str-scores.html 2002 Nov 12 4:24:46
Annotated amino acid/100-30-dssp-ebghstl two-track target model scores YGR018C.t2k-100-30-dssp-ebghstl-scores.html 2002 Nov 12 4:26:03
Annotated amino acid/100-30-stride-ebghtl two-track target model scores YGR018C.t2k-100-30-stride-ebghtl-scores.html 2002 Nov 12 4:27:20
Annotated amino acid/100-30-alpha two-track target model scores YGR018C.t2k-100-30-alpha-scores.html 2002 Nov 12 4:28:36
Annotated amino acid/100-30-dssp-ehl2 two-track target model scores YGR018C.t2k-100-30-dssp-ehl2-scores.html 2002 Nov 12 4:29:52
Template model scores
Annotated template model scores YGR018C.template-lib-scores.html 2002 Nov 12 4:33:51
Top Hits
Best scoring hits from all models YGR018C.t2k.best-scores.html 2002 Nov 12 4:33:52
Alignments for Top Hits
T02 Many Alignments Summary YGR018C.t2k.many_alignments.html 2002 Nov 12 4:34:01
T02 Top Models Summary YGR018C.t2k.top_reported_alignments.html 2002 Dec 29 12:00:37
Undertaker (3d) files
Script for dssp coloring in rasmol YGR018C.t2k.dssp-color.rasmol 2002 Nov 3 7:10:39
Script for stride coloring in rasmol YGR018C.t2k.stride-color.rasmol 2002 Nov 3 7:10:40
Script for str coloring in rasmol YGR018C.t2k.str-color.rasmol 2002 Nov 3 7:10:39
Script for alpha coloring in rasmol YGR018C.t2k.alpha-color.rasmol 2002 Nov 3 7:10:41
Multiple alignment for undertaker templates YGR018C.t2k-2track-undertaker.a2m 2002 Dec 29 12:01:55
Undertaker input for top alignments YGR018C.t2k.undertaker-align.under 2002 Dec 29 12:01:55
PDB file with models for top alignments YGR018C.t2k.undertaker-align.pdb.gz 2002 Dec 29 12:02:31
Fragment list for undertaker (from fragfinder) YGR018C.t2k.frag.gz 2002 Nov 3 7:35:45

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001

SAM_T02 web system designed by Rachel Karchin and Kevin Karplus

rachelk@soe.ucsc.edu
karplus@soe.ucsc.edu