# List of top-scoring protein chains for t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gosA 520 1.36e-01 c.3.1.2 65425 d.16.1.5 65426 1ac6A 110 4.66e-01 1tcrA b.1.1.1 20606 1prtC 196 6.66e-01 1bcpB b.40.2.1 25117 d.169.1.2 42426 1bcpC 199 6.75e-01 1bcpB b.40.2.1 25121 d.169.1.2 42430 1gcb 454 1.08e+00 3gcb d.3.1.1 37034 3gcb 470 1.11e+00 3gcb d.3.1.1 37032 1a6r 471 1.11e+00 3gcb d.3.1.1 37033 1i3pA 298 5.43e+00 b.28.1.1 66020 1p35A 299 5.52e+00 1p35A b.28.1.1 23925 1i4eA 300 5.53e+00 1p35A b.28.1.1 61685 1i3sC 298 5.83e+00 b.28.1.1 66023 1jrhI 108 6.21e+00 1jrhI b.1.2.1 22059 1ueaB 184 6.84e+00 1br9 b.40.3.1 25232 1kshA 186 8.45e+00 1ksgA 186 8.66e+00 2dkb 432 8.82e+00 2dkb c.67.1.4 34438 1bomB 28 9.41e+00 g.1.1.1 43996 1dgd 432 9.53e+00 2dkb c.67.1.4 34443 1d7uA 433 9.56e+00 2dkb c.67.1.4 34439 1b8iB 63 1.01e+01 1akhA a.4.1.1 16011 1du6A 64 1.04e+01 1akhA a.4.1.1 16002 1ksjA 186 1.07e+01 1jmkC 230 1.11e+01 1thg 544 1.19e+01 1thg c.69.1.17 34763 1fwqA 123 1.59e+01 1fwqA b.88.1.1 28394 1hxrA 115 1.86e+01 1fwqA b.88.1.1 28392 1b72B 87 1.94e+01 1akhA a.4.1.1 16001 1ag8A 499 1.96e+01 1bpwA c.82.1.1 35341 1cw3A 494 1.97e+01 1bpwA c.82.1.1 35349 1byoA 99 2.01e+01 1plc b.6.1.1 22859 1fyhB 229 2.07e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056 1sly 618 2.09e+01 1qsaA a.118.5.1 19184 d.2.1.6 36990 1jj2V 154 2.16e+01 1ffkT d.59.1.1 63107 1ffkT 154 2.16e+01 1ffkT d.59.1.1 39527 1jihA 531 2.34e+01 e.8.1.5 66740 1qupA 222 2.36e+01 1qupA b.1.8.1 22301 d.58.17.1 39352 1qsaA 618 2.38e+01 1qsaA a.118.5.1 19182 d.2.1.6 36988 1hlm 159 2.44e+01 1hlb a.1.1.2 15626 1fg9C 245 2.49e+01 1jrhI b.1.2.1 22060 b.1.2.1 22061 1dnlA 199 2.71e+01 1ci0A b.45.1.1 25753 1qcsA 211 2.71e+01 1qcsA b.52.2.3 26927 d.31.1.1 38461 1g79A 218 2.74e+01 1ci0A b.45.1.1 25752 1qdnC 204 2.83e+01 1qcsA b.52.2.3 26930 d.31.1.1 38464 1jnwA 218 2.94e+01 1ci0A b.45.1.1 63200 2hdhA 293 2.95e+01 2hdhA a.100.1.3 18795 c.2.1.6 30199 1h4jA 599 2.97e+01 4aahA b.70.1.1 60590 1h4iA 599 3.01e+01 4aahA b.70.1.1 60586 1fbr 93 3.05e+01 1fbr g.27.1.1 44948 g.27.1.1 44949 1iicA 422 3.30e+01 1nmtA d.108.1.2 62422 d.108.1.2 62423 1kqfA 1015 3.41e+01 1fs5A 266 3.41e+01 c.35.1.1 65044 1fsfA 266 3.41e+01 c.35.1.1 65047 1deaA 266 3.41e+01 1deaA c.35.1.1 31760 1b3uA 588 3.45e+01 1b3uA a.118.1.2 19135 1h6yA 170 3.70e+01 1h6xA 170 3.91e+01 1g3gA 164 3.98e+01 1g6gA b.26.1.2 23918