# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gosA 520 7.03e-02 c.3.1.2 65425 d.16.1.5 65426 1a6r 471 8.69e-01 3gcb d.3.1.1 37033 1gcb 454 8.95e-01 3gcb d.3.1.1 37034 1ac6A 110 9.26e-01 1tcrA b.1.1.1 20606 3gcb 470 9.69e-01 3gcb d.3.1.1 37032 1hq0A 295 3.36e+00 1hzgA d.194.1.1 61122 1bcpC 199 3.45e+00 1bcpB b.40.2.1 25121 d.169.1.2 42430 1hzgA 295 4.35e+00 1hzgA d.194.1.1 61436 1dnlA 199 8.33e+00 1ci0A b.45.1.1 25753 1dzlA 505 9.79e+00 1dzlA b.10.1.4 23586 1g79A 218 1.01e+01 1ci0A b.45.1.1 25752 1jetA 517 1.01e+01 1jevA c.94.1.1 35718 2olbA 517 1.01e+01 1jevA c.94.1.1 35721 1jevA 517 1.01e+01 1jevA c.94.1.1 35720 1ci0A 228 1.21e+01 1ci0A b.45.1.1 25750 1rl2A 137 1.30e+01 1rl2A b.34.5.3 24610 b.40.4.5 25342 1b8aA 438 1.35e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1eylA 186 1.38e+01 1wba b.42.4.1 25593 1cleA 534 1.50e+01 1thg c.69.1.17 34771 1tsp 559 1.57e+01 1tyv b.80.1.6 28044 1jrhI 108 1.60e+01 1jrhI b.1.2.1 22059 1qq1A 559 1.60e+01 1tyv b.80.1.6 28041 1qa1A 554 1.61e+01 1tyv b.80.1.6 28047 2bc2B 227 1.62e+01 1a7tA d.157.1.1 42032 1icfB 42 1.87e+01 1cs8A 2vil 126 1.93e+01 2vil d.109.1.1 40830 2vik 126 2.09e+01 2vil d.109.1.1 40829 1jrmA 104 2.14e+01 d.206.1.1 67136 1fm0E 150 2.21e+01 1fmaE d.41.5.1 38629 1lcyA 325 2.23e+01 1fmaE 150 2.30e+01 1fmaE d.41.5.1 38630 1i6aA 219 2.30e+01 c.94.1.1 61827 1f5mB 180 2.36e+01 1f5mB d.110.2.1 40896 2bc2A 227 2.41e+01 1a7tA d.157.1.1 42031 1l7yA 94 2.68e+01 1f5mA 180 2.78e+01 1f5mB d.110.2.1 40895 2pspA 106 2.89e+01 2pspA g.16.1.1 44730 g.16.1.1 44731 1ac5 483 2.92e+01 1ac5 c.69.1.5 34653 1bypA 99 3.12e+01 1plc b.6.1.1 22858 1qmuA 380 3.12e+01 1qmuA b.3.2.1 22534 c.56.5.1 33827 1fyhB 229 3.13e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056 2viuA 328 3.22e+01 1hgeA b.19.1.2 23797 1sly 618 3.25e+01 1qsaA a.118.5.1 19184 d.2.1.6 36990 1qsaA 618 3.28e+01 1qsaA a.118.5.1 19182 d.2.1.6 36988 2jhbA 143 3.32e+01 2jhbA b.54.1.1 26950 1crl 534 3.35e+01 1thg c.69.1.17 34765 1pcp 106 3.43e+01 2pspA g.16.1.1 44742 g.16.1.1 44743 1qkmA 255 3.47e+01 3erdA a.123.1.1 19309 1qo3C 137 3.49e+01 1qo3C d.169.1.1 42350 1shdA 107 3.64e+01 1fmk d.93.1.1 40440 1h9dB 134 3.66e+01 2jhbA b.54.1.1 60822 1h8lA 380 3.71e+01 b.3.2.1 65737 c.56.5.1 65738 1fbr 93 3.72e+01 1fbr g.27.1.1 44948 g.27.1.1 44949 2mjpA 193 3.75e+01 1b78A c.51.4.1 33223 1bjmA 216 3.86e+01 8fabA b.1.1.1 20524 b.1.1.2 21460 1hylA 230 3.93e+01 5ptp b.47.1.2 26076 2hlcA 230 3.93e+01 5ptp b.47.1.2 26074