# List of top-scoring protein chains for t2k-100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gosA 520 7.56e-02 c.3.1.2 65425 d.16.1.5 65426 1ac6A 110 2.72e-01 1tcrA b.1.1.1 20606 1bcpC 199 1.55e+00 1bcpB b.40.2.1 25121 d.169.1.2 42430 3gcb 470 3.32e+00 3gcb d.3.1.1 37032 1jevA 517 3.59e+00 1jevA c.94.1.1 35720 1a6r 471 3.79e+00 3gcb d.3.1.1 37033 1gcb 454 3.79e+00 3gcb d.3.1.1 37034 2olbA 517 4.87e+00 1jevA c.94.1.1 35721 1hzgA 295 6.26e+00 1hzgA d.194.1.1 61436 1hq0A 295 6.28e+00 1hzgA d.194.1.1 61122 1jrhI 108 6.42e+00 1jrhI b.1.2.1 22059 1jetA 517 7.39e+00 1jevA c.94.1.1 35718 1fm0E 150 8.28e+00 1fmaE d.41.5.1 38629 1fmaE 150 8.31e+00 1fmaE d.41.5.1 38630 1cleA 534 8.60e+00 1thg c.69.1.17 34771 1bomB 28 9.02e+00 g.1.1.1 43996 1fg9C 245 1.04e+01 1jrhI b.1.2.1 22060 b.1.2.1 22061 1jrmA 104 1.18e+01 d.206.1.1 67136 1crl 534 1.22e+01 1thg c.69.1.17 34765 1fyhB 229 1.24e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056 1ueaB 184 1.46e+01 1br9 b.40.3.1 25232 1rl2A 137 1.56e+01 1rl2A b.34.5.3 24610 b.40.4.5 25342 1qsaA 618 1.56e+01 1qsaA a.118.5.1 19182 d.2.1.6 36988 1b8aA 438 1.65e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1sly 618 1.74e+01 1qsaA a.118.5.1 19184 d.2.1.6 36990 3rp2A 224 1.86e+01 1a7s b.47.1.2 26298 1j8hD 212 2.21e+01 1smnA 245 2.22e+01 1qaeA d.4.1.2 37143 1qcsA 211 2.22e+01 1qcsA b.52.2.3 26927 d.31.1.1 38461 1erjA 393 2.24e+01 1erjA b.69.4.1 27660 1icfB 42 2.25e+01 1cs8A 1qaeA 245 2.25e+01 1qaeA d.4.1.2 37141 1hgeA 328 2.29e+01 1hgeA b.19.1.2 23816 1k5jA 124 2.36e+01 b.13.3.1 68201 1thg 544 2.75e+01 1thg c.69.1.17 34763 2viuA 328 2.76e+01 1hgeA b.19.1.2 23797 1ql0A 241 2.90e+01 1qaeA d.4.1.2 37139 1dnlA 199 2.94e+01 1ci0A b.45.1.1 25753 1g8tA 245 3.03e+01 1qaeA d.4.1.2 37137 1hylA 230 3.07e+01 5ptp b.47.1.2 26076 2hlcA 230 3.11e+01 5ptp b.47.1.2 26074 1jnrB 150 3.12e+01 d.58.1.5 66969 2ifeA 100 3.36e+01 1tig d.68.1.1 39567 1ahm 129 3.43e+01 1a9v b.1.1.5 21944 1l7yA 94 3.45e+01 1h8lA 380 3.48e+01 b.3.2.1 65737 c.56.5.1 65738 1f5mB 180 3.56e+01 1f5mB d.110.2.1 40896 1h4wA 224 3.59e+01 b.47.1.2 65622 1ac5 483 3.62e+01 1ac5 c.69.1.5 34653 1a3qA 285 3.69e+01 1a3qA b.1.1.5 21932 b.2.5.1 22447 1g79A 218 3.71e+01 1ci0A b.45.1.1 25752 1shdA 107 3.75e+01 1fmk d.93.1.1 40440 1f5mA 180 3.75e+01 1f5mB d.110.2.1 40895 1qmuA 380 3.81e+01 1qmuA b.3.2.1 22534 c.56.5.1 33827 1lcyA 325 3.82e+01 1je0A 236 3.82e+01 c.56.2.1 66581 1zfjA 491 3.94e+01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541