# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1gosA	520	2.01e-01		c.3.1.2	65425
				d.16.1.5	65426
1ac6A	110	4.12e-01	1tcrA	b.1.1.1	20606
1gcb	454	6.25e-01	3gcb	d.3.1.1	37034
1a6r	471	6.97e-01	3gcb	d.3.1.1	37033
3gcb	470	6.99e-01	3gcb	d.3.1.1	37032
1bcpC	199	3.17e+00	1bcpB	b.40.2.1	25121
				d.169.1.2	42430
1qmuA	380	6.50e+00	1qmuA	b.3.2.1	22534
				c.56.5.1	33827
1jrhI	108	7.75e+00	1jrhI	b.1.2.1	22059
1dnlA	199	9.20e+00	1ci0A	b.45.1.1	25753
1qa1A	554	1.13e+01	1tyv	b.80.1.6	28047
1qq1A	559	1.17e+01	1tyv	b.80.1.6	28041
1g79A	218	1.28e+01	1ci0A	b.45.1.1	25752
1tsp	559	1.35e+01	1tyv	b.80.1.6	28044
1h8lA	380	1.39e+01		b.3.2.1	65737
				c.56.5.1	65738
1ueaB	184	1.44e+01	1br9	b.40.3.1	25232
1fg9C	245	1.53e+01	1jrhI	b.1.2.1	22060
				b.1.2.1	22061
1fyhB	229	1.65e+01	1jrhI	b.1.2.1	22055
				b.1.2.1	22056
1jrmA	104	1.65e+01		d.206.1.1	67136
1ci0A	228	1.65e+01	1ci0A	b.45.1.1	25750
1jm6A	407	1.81e+01		a.29.5.1	66876
				d.122.1.4	66877
1fm0E	150	1.94e+01	1fmaE	d.41.5.1	38629
1fmaE	150	1.97e+01	1fmaE	d.41.5.1	38630
1bypA	99	2.13e+01	1plc	b.6.1.1	22858
1shdA	107	2.18e+01	1fmk	d.93.1.1	40440
1tyu	543	2.22e+01	1tyv	b.80.1.6	28037
1dzlA	505	2.26e+01	1dzlA	b.10.1.4	23586
1bomB	28	2.32e+01		g.1.1.1	43996
3rp2A	224	2.44e+01	1a7s	b.47.1.2	26298
1fbr	93	2.72e+01	1fbr	g.27.1.1	44948
				g.27.1.1	44949
1hzgA	295	2.77e+01	1hzgA	d.194.1.1	61436
1fsfA	266	2.80e+01		c.35.1.1	65047
1hq0A	295	2.87e+01	1hzgA	d.194.1.1	61122
1cjbA	231	2.92e+01	1qk3A	c.61.1.1	34079
1lcyA	325	2.99e+01			
1k2eA	156	3.18e+01			
1l7yA	94	3.21e+01			
1ahm	129	3.28e+01	1a9v	b.1.1.5	21944
1k26A	156	3.29e+01			
1b8aA	438	3.53e+01	1b8aA	b.40.4.1	25244
				d.104.1.1	40765
1k5jA	124	3.57e+01		b.13.3.1	68201
1f5mA	180	3.59e+01	1f5mB	d.110.2.1	40895
1f5mB	180	3.59e+01	1f5mB	d.110.2.1	40896
2vik	126	3.71e+01	2vil	d.109.1.1	40829