# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gosA 520 4.30e-02 c.3.1.2 65425 d.16.1.5 65426 1ac6A 110 3.16e-01 1tcrA b.1.1.1 20606 1bcpC 199 6.00e-01 1bcpB b.40.2.1 25121 d.169.1.2 42430 3gcb 470 1.09e+00 3gcb d.3.1.1 37032 1gcb 454 1.20e+00 3gcb d.3.1.1 37034 1a6r 471 1.55e+00 3gcb d.3.1.1 37033 1jrhI 108 3.10e+00 1jrhI b.1.2.1 22059 1dnlA 199 3.84e+00 1ci0A b.45.1.1 25753 1jm6A 407 4.60e+00 a.29.5.1 66876 d.122.1.4 66877 1ahm 129 5.02e+00 1a9v b.1.1.5 21944 1g79A 218 5.36e+00 1ci0A b.45.1.1 25752 3rp2A 224 5.82e+00 1a7s b.47.1.2 26298 1qa1A 554 5.87e+00 1tyv b.80.1.6 28047 1qq1A 559 6.77e+00 1tyv b.80.1.6 28041 1fg9C 245 7.27e+00 1jrhI b.1.2.1 22060 b.1.2.1 22061 1hzgA 295 7.97e+00 1hzgA d.194.1.1 61436 1tsp 559 8.06e+00 1tyv b.80.1.6 28044 1hq0A 295 8.11e+00 1hzgA d.194.1.1 61122 1a3qA 285 8.42e+00 1a3qA b.1.1.5 21932 b.2.5.1 22447 1fyhB 229 8.43e+00 1jrhI b.1.2.1 22055 b.1.2.1 22056 1fm0E 150 8.94e+00 1fmaE d.41.5.1 38629 1fmaE 150 8.98e+00 1fmaE d.41.5.1 38630 1bomB 28 9.11e+00 g.1.1.1 43996 1jevA 517 9.31e+00 1jevA c.94.1.1 35720 1rl2A 137 1.11e+01 1rl2A b.34.5.3 24610 b.40.4.5 25342 1cleA 534 1.11e+01 1thg c.69.1.17 34771 2hlcA 230 1.12e+01 5ptp b.47.1.2 26074 1lcyA 325 1.14e+01 1ac5 483 1.26e+01 1ac5 c.69.1.5 34653 2olbA 517 1.29e+01 1jevA c.94.1.1 35721 1theA 260 1.38e+01 1theB d.3.1.1 37056 1hylA 230 1.55e+01 5ptp b.47.1.2 26076 1crl 534 1.62e+01 1thg c.69.1.17 34765 1k5jA 124 1.67e+01 b.13.3.1 68201 1tyu 543 1.87e+01 1tyv b.80.1.6 28037 1erjA 393 1.98e+01 1erjA b.69.4.1 27660 1sly 618 2.00e+01 1qsaA a.118.5.1 19184 d.2.1.6 36990 1eylA 186 2.01e+01 1wba b.42.4.1 25593 1icfB 42 2.28e+01 1cs8A 1bvoA 175 2.29e+01 1a3qA b.2.5.1 22457 1qsaA 618 2.39e+01 1qsaA a.118.5.1 19182 d.2.1.6 36988 1hgeA 328 2.50e+01 1hgeA b.19.1.2 23816 1jrmA 104 2.52e+01 d.206.1.1 67136 1f42A 306 2.58e+01 1f42A b.1.1.4 59636 b.1.2.1 59637 b.1.2.1 59638 1fbr 93 2.59e+01 1fbr g.27.1.1 44948 g.27.1.1 44949 1jrkA 156 2.63e+01 1tib 269 2.70e+01 3tgl c.69.1.17 34738 1jetA 517 2.73e+01 1jevA c.94.1.1 35718 1sgt 223 2.74e+01 5ptp b.47.1.1 25814 1theB 260 2.77e+01 1theB d.3.1.1 37057 2vil 126 2.93e+01 2vil d.109.1.1 40830 2viuA 328 2.98e+01 1hgeA b.19.1.2 23797 1k2eA 156 3.06e+01 1bypA 99 3.07e+01 1plc b.6.1.1 22858 2vik 126 3.08e+01 2vil d.109.1.1 40829 1k26A 156 3.21e+01 1nfkA 325 3.22e+01 1a3qA b.1.1.5 21929 b.2.5.1 22444 1ueaB 184 3.23e+01 1br9 b.40.3.1 25232 2ifeA 100 3.34e+01 1tig d.68.1.1 39567 1ci0A 228 3.41e+01 1ci0A b.45.1.1 25750 1h8lA 380 3.44e+01 b.3.2.1 65737 c.56.5.1 65738 1jfmA 174 3.52e+01 d.19.1.1 66640 1f5mB 180 3.57e+01 1f5mB d.110.2.1 40896 1f5mA 180 3.71e+01 1f5mB d.110.2.1 40895 2mjpA 193 3.82e+01 1b78A c.51.4.1 33223 1qmuA 380 3.88e+01 1qmuA b.3.2.1 22534 c.56.5.1 33827 1zfjA 491 3.89e+01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541