# List of top-scoring protein chains for YGR017W.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2i51A 195 1.29e-38 1t9mA 214 8.96e-10 1ty9A 222 5.83e-08 1nrgA 261 8.69e-08 b.45.1.1 80694 1dnlA 199 6.17e-05 1ci0A b.45.1.1 25753 1g79A 218 6.46e-05 1ci0A b.45.1.1 25752 2a2jA 246 1.02e-03 1ci0A 228 1.20e-01 1ci0A b.45.1.1 25750 1egxA 115 2.99e-01 1evhA b.55.1.4 27000 1v9pA 584 1.34e+00 a.60.2.2 100544 b.40.4.6 100545 d.142.2.2 100546 2bjsA 325 1.57e+00 1odmA 331 1.60e+00 b.82.2.1 86875 1zvsA 278 1.90e+00 1rfeA 162 1.98e+00 1m8pA 573 2.27e+00 b.122.1.3 78777 c.26.1.5 78778 c.37.1.15 78779 1i2dA 573 2.34e+00 1g8fA b.122.1.3 61556 c.26.1.5 61557 c.37.1.15 61558 2i02A 148 2.37e+00 1qbhA 101 3.05e+00 1g3fA g.52.1.1 45374 1vgkA 274 3.38e+00 2fwoA 283 3.55e+00 2dafA 118 3.86e+00 1itcA 516 4.19e+00 b.3.1.1 83705 c.1.8.1 83706 1oflA 481 4.46e+00 b.80.1.4 103934 1kcw 1046 4.55e+00 1kcw b.6.1.3 23151 b.6.1.3 23152 b.6.1.3 23153 b.6.1.3 23154 b.6.1.3 23155 b.6.1.3 23156 1dboA 506 4.60e+00 1dbgA b.80.1.4 28034 2iutA 574 4.65e+00 1venA 516 4.87e+00 1vemA 516 5.30e+00 1veoA 516 5.85e+00 1vepA 516 5.85e+00 2g98A 173 6.06e+00 2tbvA 387 6.76e+00 2tbvA b.121.4.7 23302 1qsfA 274 6.80e+00 1agdA b.1.1.2 20724 d.19.1.1 38251 1ry2A 663 6.90e+00 e.23.1.1 98083 1npbA 141 7.64e+00 d.32.1.2 92026 1x7qA 275 7.66e+00 1larA 575 7.90e+00 1larA c.45.1.2 32693 c.45.1.2 32694 1i5kA 84 8.44e+00 5hpgA g.14.1.1 61789 1ki0A 253 8.53e+00 g.14.1.1 72493 g.14.1.1 72494 g.14.1.1 72495 1hk0X 173 9.01e+00 b.11.1.1 83522 b.11.1.1 83523 1h4aX 173 9.11e+00 b.11.1.1 83479 b.11.1.1 83480 3hlaA 270 9.18e+00 1agdA b.1.1.2 20686 d.19.1.1 38232 2av1A 275 9.32e+00 1s9wA 274 9.37e+00 b.1.1.2 105391 d.19.1.1 105392 2av7A 275 9.41e+00 1i4fA 275 9.44e+00 1agdA b.1.1.2 61687 d.19.1.1 61688 1ogaA 276 9.53e+00 b.1.1.2 86987 d.19.1.1 86988 1hhkA 280 9.55e+00 1agdA b.1.1.2 20690 d.19.1.1 38234 2c2bA 486 9.70e+00 1r22A 122 9.92e+00 a.4.5.5 104777 1r1tA 122 1.05e+01 a.4.5.5 104769 1zirA 173 1.05e+01 1e5xA 486 1.05e+01 c.79.1.1 59283 1iud 380 1.07e+01 4mbp c.94.1.1 35786 1mqsA 671 1.10e+01 e.25.1.1 79414 1hsbA 270 1.18e+01 1agdA b.1.1.2 20736 d.19.1.1 38257 1w72A 274 1.18e+01 1exuA 267 1.18e+01 1agdA b.1.1.2 20864 d.19.1.1 38324 1ua4A 455 1.28e+01 c.72.1.3 99128 1zt2B 212 1.31e+01 1cb8A 678 1.40e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1hmuA 700 1.43e+01 1cb8A a.102.3.2 61089 b.24.1.1 61090 b.30.5.2 61091 1bak 119 1.45e+01 1bak b.55.1.1 26973 1l1eA 287 1.46e+01 c.66.1.18 73454 1ekmA 656 1.51e+01 1a2vA b.30.2.1 24413 d.17.2.1 38053 d.17.2.1 38054 2ffiA 288 1.51e+01 1a2vA 655 1.51e+01 1a2vA b.30.2.1 24416 d.17.2.1 38059 d.17.2.1 38060 1l2lA 457 1.52e+01 c.72.1.3 77656 1t2bA 397 1.54e+01 1qc6A 130 1.54e+01 1evhA b.55.1.4 26998 2droA 396 1.56e+01 1kopA 223 1.57e+01 2cba b.74.1.1 27966 2b5oA 402 1.57e+01 2ckzB 218 1.57e+01 1b2iA 83 1.61e+01 5hpgA g.14.1.1 44640 1d8hA 311 1.64e+01 1d8iA d.63.1.1 39544 1efxA 278 1.64e+01 1agdA b.1.1.2 20767 d.19.1.1 38273 2gv9A 1193 1.64e+01 1olrA 224 1.68e+01 b.29.1.11 93330 1urdA 370 1.70e+01 c.94.1.1 99825 1eh1A 185 1.76e+01 1dd5A d.67.3.1 39565 1k5nA 276 1.78e+01 b.1.1.2 77266 d.19.1.1 77267 1ndh 272 1.82e+01 1ndh b.43.4.2 25662 c.25.1.1 31552 1ursA 402 1.90e+01 c.94.1.1 99833 2b6bD 175 1.92e+01 1avaA 403 2.00e+01 1jdc b.71.1.1 27797 c.1.8.1 28784 1y7bA 542 2.08e+01 2f2fC 186 2.13e+01 1dgsA 667 2.15e+01 1dgsA a.60.2.2 17963 b.40.4.6 25365 d.142.2.2 41581 1a45 173 2.16e+01 1amm b.11.1.1 23602 b.11.1.1 23603 1w5dA 462 2.17e+01 1o65A 246 2.21e+01 b.58.1.2 92544 1lit 144 2.22e+01 1qddA d.169.1.1 42325 1wdiA 345 2.24e+01 1wwvA 91 2.26e+01 2f8nG 120 2.27e+01 1evhA 112 2.35e+01 1evhA b.55.1.4 26997 1kprA 274 2.35e+01 b.1.1.2 77480 d.19.1.1 77481 1ej6D 418 2.41e+01 i.7.1.1 45970 1o7dC 159 2.47e+01 b.30.5.6 86640 8cho 125 2.50e+01 1opy d.17.4.3 38108 2a4aA 281 2.51e+01 1ydpA 275 2.51e+01 1buqA 125 2.57e+01 1opy d.17.4.3 38111 2ab0A 205 2.57e+01 2d31A 276 2.59e+01 1ocvA 125 2.66e+01 d.17.4.3 86810 2dpmA 284 2.89e+01 2dpmA c.66.1.28 34246 2a87A 335 2.89e+01 1mheA 274 2.89e+01 1agdA b.1.1.2 20771 d.19.1.1 38275 1ogzA 125 2.94e+01 d.17.4.3 92976 1ohsA 125 2.96e+01 2esvA 275 2.97e+01 1uv7A 110 2.99e+01 d.67.4.1 100040 1r1a2 263 3.15e+01 1aym2 1elpA 173 3.25e+01 1amm b.11.1.1 23596 b.11.1.1 23597 1umkA 275 3.26e+01 1d4oA 184 3.31e+01 1d4oA c.31.1.4 31748 1aw5 340 3.33e+01 1b4kA c.1.10.3 29181 2a83A 276 3.36e+01 2drqA 396 3.38e+01 1ohpA 125 3.41e+01 1jqsC 68 3.41e+01 i.1.1.1 63239 1u07A 90 3.46e+01 2bssA 276 3.46e+01 2ew2A 316 3.48e+01 1jixA 351 3.50e+01 1c3jA c.87.1.1 63081 1cto 109 3.51e+01 1cto b.1.2.1 22054 1qddA 144 3.56e+01 1qddA d.169.1.1 42324 1ew3A 159 3.58e+01 1mup b.60.1.1 27114 1z54A 132 3.60e+01 2drsA 396 3.68e+01 1dkuA 317 3.70e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1iskA 125 3.77e+01 1opy d.17.4.3 38109 2gskB 81 3.77e+01 1wu4A 396 3.78e+01 1hocA 272 3.79e+01 1agdA b.1.1.2 20815 d.19.1.1 38297 1qjgE 125 3.80e+01 1opy d.17.4.3 38106 1wu6A 396 3.82e+01 1ce6A 274 3.83e+01 1agdA b.1.1.2 20819 d.19.1.1 38299 1yn6A 273 3.83e+01 2drrA 396 3.84e+01 1inqA 275 3.84e+01 b.1.1.2 71247 d.19.1.1 71248 1jufA 276 3.85e+01 b.1.1.2 71881 d.19.1.1 71882 1rp9A 405 3.85e+01 1bz9A 277 3.88e+01 1agdA b.1.1.2 20829 d.19.1.1 38304 1wbxA 276 3.88e+01 1rrb 107 3.89e+01 1c1yB d.15.1.5 37621 1jpfA 281 3.93e+01 b.1.1.2 67016 d.19.1.1 67017 1n3nA 280 3.95e+01 b.1.1.2 85303 d.19.1.1 85304 1qjgF 125 3.95e+01 1opy d.17.4.3 38107 1gxrA 337 3.98e+01 b.69.4.1 70722 1sr4C 166 3.99e+01 b.42.2.1 105950