# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2i51A 195 3.23e-44 1t9mA 214 6.94e-15 1ty9A 222 7.49e-13 1nrgA 261 1.60e-10 b.45.1.1 80694 1g79A 218 2.48e-09 1ci0A b.45.1.1 25752 1dnlA 199 2.76e-09 1ci0A b.45.1.1 25753 1ci0A 228 1.66e-07 1ci0A b.45.1.1 25750 2a2jA 246 2.15e-07 2i02A 148 4.29e-03 2aq6A 147 3.95e-02 1xxoA 147 4.12e-02 1w9aA 147 4.38e-02 1rfeA 162 8.33e-02 2fhqA 141 2.35e-01 1egxA 115 2.85e-01 1evhA b.55.1.4 27000 2dafA 118 4.12e-01 2asfA 137 5.47e-01 1d8hA 311 8.21e-01 1d8iA d.63.1.1 39544 1e1hA 287 8.25e-01 d.92.1.7 83167 2b25A 336 9.36e-01 1d8iA 311 1.39e+00 1d8iA d.63.1.1 39541 2hhzA 150 1.63e+00 1l7dA 384 2.48e+00 c.2.1.4 77774 c.23.12.2 77775 2iutA 574 2.60e+00 1ywnA 316 3.50e+00 1hfuA 503 3.53e+00 b.6.1.3 65827 b.6.1.3 65828 b.6.1.3 65829 2ac1A 541 3.74e+00 1z9tA 255 3.78e+00 2g9zA 348 3.82e+00 1oflA 481 4.07e+00 b.80.1.4 103934 1qawF 74 4.53e+00 1wapA b.82.5.1 28202 1gtfA 74 4.53e+00 b.82.5.1 70460 1iknA 286 4.88e+00 1a3qA b.1.18.1 21936 b.2.5.3 22449 1vkxA 273 5.50e+00 1a3qA b.1.18.1 21941 b.2.5.3 22454 2b5lC 222 5.52e+00 1a65A 504 5.84e+00 1a65A b.6.1.3 23148 b.6.1.3 23149 b.6.1.3 23150 1mz5A 638 5.88e+00 b.29.1.15 79679 b.68.1.1 79680 1f8gA 384 6.04e+00 1sayA c.2.1.4 59695 c.23.12.2 59696 2extA 77 6.35e+00 1llwA 1520 6.47e+00 b.80.4.1 74017 c.1.4.1 74018 d.153.1.1 74019 1duzA 275 6.66e+00 1agdA b.1.1.2 20670 d.19.1.1 38224 2av1A 275 6.93e+00 2av7A 275 6.94e+00 1wapA 75 7.26e+00 1wapA b.82.5.1 28153 1tmcA 175 7.26e+00 1agdA d.19.1.1 38258 1i4fA 275 7.73e+00 1agdA b.1.1.2 61687 d.19.1.1 61688 1n1tA 641 8.03e+00 b.29.1.15 79821 b.68.1.1 79822 1ej6D 418 8.11e+00 i.7.1.1 45970 1m4uA 206 8.51e+00 g.17.1.7 78625 1kjqA 391 9.74e+00 b.84.2.1 72616 c.30.1.1 72617 d.142.1.2 72618 1eyzA 392 1.06e+01 1ez1A b.84.2.1 28246 c.30.1.1 31653 d.142.1.2 41498 1ez1A 392 1.07e+01 1ez1A b.84.2.1 28248 c.30.1.1 31655 d.142.1.2 41500 2fg9A 178 1.08e+01 1sacA 204 1.17e+01 1sacA b.29.1.5 24237 1f6bA 198 1.24e+01 c.37.1.8 64986 1dbgA 506 1.29e+01 1dbgA b.80.1.4 28033 1vqoE 178 1.32e+01 2htdA 140 1.36e+01 1cb8A 678 1.39e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1hm2A 700 1.41e+01 1cb8A a.102.3.2 61083 b.24.1.1 61084 b.30.5.2 61085 1a1nA 276 1.49e+01 1agdA b.1.1.2 20755 d.19.1.1 38267 1xh3A 276 1.49e+01 1i6pA 220 1.56e+01 1ddzA c.53.2.1 61848 1hsbA 270 1.58e+01 1agdA b.1.1.2 20736 d.19.1.1 38257 1b9kA 238 1.63e+01 1qtsA b.1.10.1 22315 d.105.1.1 40791 1qtsA 247 1.67e+01 1qtsA b.1.10.1 22313 d.105.1.1 40789 1gpmA 525 1.73e+01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1l1eA 287 1.76e+01 c.66.1.18 73454 1k6wA 426 1.80e+01 b.92.1.2 68236 c.1.9.5 68237 1i7qA 519 1.88e+01 1qdlA d.161.1.1 61901 1jj2E 177 1.89e+01 1ffk1 d.141.1.1 63089 d.141.1.1 63090 2bvpA 276 1.93e+01 1kfuS 184 1.93e+01 a.39.1.8 68574 1h6rA 236 1.94e+01 d.22.1.1 65683 1pz7A 204 1.94e+01 b.29.1.4 95405 1o65A 246 2.03e+01 b.58.1.2 92544 2bi7A 384 2.05e+01 1ra0A 430 2.05e+01 1s72E 178 2.07e+01 d.141.1.1 105323 d.141.1.1 105324 1agdA 276 2.16e+01 1agdA b.1.1.2 20741 d.19.1.1 38260 1kyfA 247 2.16e+01 b.1.10.1 73220 d.105.1.1 73221 2gp5A 349 2.16e+01 1a81A 254 2.22e+01 1a81A d.93.1.1 40507 d.93.1.1 40508 1dyqA 234 2.25e+01 3seb b.40.2.2 59140 d.15.6.1 59141 1mg2D 155 2.28e+01 a.3.1.1 79062 1a9eA 277 2.28e+01 1agdA b.1.1.2 20757 d.19.1.1 38268 1sqnA 261 2.33e+01 a.123.1.1 105944 1x1fA 149 2.33e+01 1waaA 93 2.33e+01 1v4sA 455 2.37e+01 c.55.1.3 100309 c.55.1.3 100310 1rewA 114 2.44e+01 g.17.1.2 97334 1dykA 394 2.48e+01 1dykA b.29.1.4 24223 b.29.1.4 24224 3thiA 371 2.55e+01 2thiA c.94.1.1 35792 1sr7A 259 2.55e+01 a.123.1.1 105957 1w3oA 216 2.59e+01 1dboA 506 2.60e+01 1dbgA b.80.1.4 28034 1q67A 231 2.62e+01 b.55.1.7 95960 2bfdA 400 2.66e+01 1a1mA 278 2.68e+01 1agdA b.1.1.2 20753 d.19.1.1 38266 1a1oA 276 2.69e+01 1agdA b.1.1.2 20751 d.19.1.1 38265 1k5nA 276 2.72e+01 b.1.1.2 77266 d.19.1.1 77267 7ahlA 293 2.90e+01 7ahlA f.6.1.1 43812 1hocA 272 2.91e+01 1agdA b.1.1.2 20815 d.19.1.1 38297 1mvcA 240 2.92e+01 a.123.1.1 79499 1mznA 240 2.92e+01 a.123.1.1 79704 2thiA 379 2.96e+01 2thiA c.94.1.1 35794 1g5yA 238 3.01e+01 1lbd a.123.1.1 60294 1esfA 233 3.02e+01 3seb b.40.2.2 25146 d.15.6.1 37735 1ofdA 1520 3.04e+01 b.80.4.1 86935 c.1.4.1 86936 d.153.1.1 86937 1b1xA 689 3.07e+01 1cb6A c.94.1.2 35865 c.94.1.2 35866 1okgA 373 3.09e+01 c.46.1.2 93250 c.46.1.2 93251 d.26.1.3 93252 1ffk1 177 3.20e+01 1ffk1 1a45 173 3.23e+01 1amm b.11.1.1 23602 b.11.1.1 23603 1ecfA 504 3.23e+01 1ecfB c.61.1.1 34053 d.153.1.1 41820 1x7yA 400 3.32e+01 1rp4A 389 3.38e+01 a.227.1.1 105027 1if1A 113 3.40e+01 2irfG a.4.5.23 16183 1jlnA 297 3.41e+01 1pty c.45.1.2 63172 1tqnA 486 3.46e+01 a.104.1.1 107238 1qu0A 191 3.46e+01 1dykA b.29.1.4 24225 2hq9A 149 3.47e+01 1evhA 112 3.47e+01 1evhA b.55.1.4 26997 1o5uA 101 3.48e+01 b.82.1.8 92518 1dkfA 233 3.49e+01 3erdA a.123.1.1 19280 1z5bA 469 3.50e+01 1ecfB 504 3.71e+01 1ecfB c.61.1.1 34054 d.153.1.1 41821 2clbA 188 3.75e+01 1a5dA 173 3.75e+01 1amm b.11.1.1 23614 b.11.1.1 23615 1vjoA 393 3.77e+01 c.67.1.3 100827 1vjpA 394 3.84e+01 c.2.1.3 100828 d.81.1.3 100829 1mlwA 301 3.93e+01 d.178.1.1 79289 1ocvA 125 3.97e+01 d.17.4.3 86810