a2m2html output for file tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- YGR016W YGR016W SGDID:S0003248, Chr VII from 522255-522827
- gi|6321453|ref|NP_011530.1|_1:190 (NC_001139) Hypothetical ORF; Ygr016wp [Saccharomyces cerevisiae]
- gi|1723647 sp|P53209|YG1A_YEAST HYPOTHETICAL 22.2 KD PROTEIN IN MSB2-UGA1 INTERGENIC REGION
- gi|2132583|pir||S64307 probable membrane protein YGR016w - yeast (Saccharomyces cerevisiae)
- gi|1322982|emb|CAA96999.1| (Z72801) ORF YGR016w [Saccharomyces cerevisiae]

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MSRLRRFNRKILSLSSDYTHDGESDQEDVSILPLDTEEQEELIQKFETNAHITNKLYINLLSILY
   2 MSRLRRFNRKILSLSSDYTHDGESDQEDVSILPLDTEEQEELIQKFETNAHITNKLYINLLSILY


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 LLYGGLLMILVRKSRGYIKLALLAGANSLICSCITLRYDIVNDYLLFKKFKLRVSNFSINIINII
   2 LLYGGLLMILVRKSRGYIKLALLAGANSLICSCITLRYDIVNDYLLFKKFKLRVSNFSINIINII


             140       150       160       170       180       190
              |         |         |         |         |         |
   1 LLVLMAWISFNHVVEDKKTVLCLQVPMFLFWVAVLVKRWARNIEDEIADLRCLKYKYKNA
   2 LLVLMAWISFNHVVEDKKTVLCLQVPMFLFWVAVLVKRWARNIEDEIADLRCLKYKYKNA