# List of top-scoring protein chains for t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1cqa 133 3.06e-01 3nul d.110.1.1 40890 1g5iD 454 2.97e+00 1g5hA c.51.1.1 60284 d.104.1.1 60285 1g5hA 454 3.49e+00 1g5hA c.51.1.1 60270 d.104.1.1 60271 1e50B 134 5.34e+00 2jhbA b.54.1.1 59245 1h9dB 134 5.34e+00 2jhbA b.54.1.1 60822 1cl3A 138 6.75e+00 2jhbA b.54.1.1 26949 1yasA 257 6.77e+00 1qj4A c.69.1.20 34801 1qj4A 257 6.77e+00 1qj4A c.69.1.20 34796 1ilfA 141 6.84e+00 b.54.1.1 62543 1eboA 131 6.86e+00 2eboA h.3.2.1 45757 2jhbA 143 6.91e+00 2jhbA b.54.1.1 26950 1outA 143 7.68e+00 1abwA a.1.1.2 15400 1efeA 60 9.50e+00 1zeiA g.1.1.1 43891 1ko4A 175 9.63e+00 1gn2A 207 1.01e+01 a.2.11.1 65359 d.44.1.1 65360 1em1A 198 1.04e+01 1avmA a.2.11.1 15752 d.44.1.1 38711 1luwA 198 1.33e+01 1ja8A 198 1.36e+01 1avmA a.2.11.1 62813 d.44.1.1 62814 1abmA 198 1.38e+01 1avmA a.2.11.1 15748 d.44.1.1 38707 1ezvE 185 1.42e+01 1rie b.33.1.1 59548 f.2.1.8 59549 1lv9A 77 1.44e+01 1qnmA 198 1.46e+01 1avmA a.2.11.1 15754 d.44.1.1 38713 1ap6A 198 1.48e+01 1avmA a.2.11.1 15746 d.44.1.1 38705 1lusA 198 1.49e+01 1spgA 144 1.53e+01 1abwA a.1.1.2 15409 1aat 411 1.66e+01 1ajsA c.67.1.1 34275 1varA 198 1.68e+01 1avmA a.2.11.1 15756 d.44.1.1 38715 1ct8B 220 1.78e+01 1igtB b.1.1.1 20409 b.1.1.2 21381 2cstA 411 1.80e+01 1ajsA c.67.1.1 34273 2eboA 74 1.87e+01 2eboA h.3.2.1 45754 2mllA 241 2.07e+01 1mrj d.165.1.1 42195 1ce7A 241 2.09e+01 1mrj d.165.1.1 42194 1af5 126 2.29e+01 1bp7A d.95.2.1 40572 1aw5 326 2.35e+01 1b4kA c.1.10.3 29181 1eqrA 590 2.36e+01 1c0aA b.40.4.1 25247 d.74.4.1 39732 d.104.1.1 40768 1c0aA 585 2.37e+01 1c0aA b.40.4.1 25246 d.74.4.1 39731 d.104.1.1 40767 1afvH 220 2.45e+01 1mfa b.1.1.1 20131 b.1.1.2 21161 1m56A 566 2.76e+01 1m57A 566 2.78e+01 1dceA 567 2.78e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1qsdA 106 2.85e+01 1qsdA a.7.5.1 16335 1vpu 45 2.89e+01 1vpu g.34.1.1 44977 1g5uA 131 2.91e+01 3nul d.110.1.1 40893 1i6uA 130 2.92e+01 d.140.1.1 61850 1kkqA 269 2.94e+01 a.123.1.1 68679 1qklA 127 3.00e+01 1qklA d.78.1.2 39754 1knqA 175 3.07e+01 1k7lA 288 3.09e+01 a.123.1.1 68268 1cp2A 269 3.11e+01 1cp2A c.37.1.10 32269 1civA 385 3.13e+01 1bmdA c.2.1.5 30134 d.162.1.1 42101 1c8m2 252 3.23e+01 1aym2 1i7gA 287 3.24e+01 1fnlA 175 3.26e+01 2fcbA b.1.1.4 21783 b.1.1.4 21784 1hskA 326 3.26e+01 2mbr d.145.1.2 61241 d.146.1.1 61242 1e4kC 176 3.29e+01 2fcbA b.1.1.4 21787 b.1.1.4 21788 1iisC 176 3.29e+01 2fcbA b.1.1.4 62458 b.1.1.4 62459 1kwpA 400 3.33e+01 1dfkA 830 3.63e+01 1lvk b.34.3.1 24573 c.37.1.9 32170 1dflA 831 3.64e+01 1lvk b.34.3.1 24574 c.37.1.9 32171 1b7tA 835 3.65e+01 1lvk b.34.3.1 24572 c.37.1.9 32169 1aym2 261 3.85e+01 1aym2 1tih 53 3.92e+01 4sgbI g.15.1.2 44725