# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1g5hA	454	3.34e-01	1g5hA	c.51.1.1	60270
				d.104.1.1	60271
1yasA	257	9.45e-01	1qj4A	c.69.1.20	34801
1qj4A	257	1.65e+00	1qj4A	c.69.1.20	34796
1g99A	408	3.45e+00	1g99A	c.55.1.2	33457
				c.55.1.2	33458
1hnoA	280	5.01e+00	1hnoA	c.14.1.3	61095
1b43A	340	5.75e+00	1a76	a.60.7.1	18092
				c.53.1.2	33362
1hzpA	335	5.93e+00	1hn9A	c.95.1.1	61455
				c.95.1.1	61456
1abmA	198	6.92e+00	1avmA	a.2.11.1	15748
				d.44.1.1	38707
1yprA	125	7.26e+00	3nul	d.110.1.1	40888
1bmfA	510	7.26e+00	1skyB	a.69.1.1	18281
				b.49.1.1	26446
				c.37.1.11	32326
1ap6A	198	7.28e+00	1avmA	a.2.11.1	15746
				d.44.1.1	38705
1f00I	282	7.98e+00	1f00I	b.1.14.1	22368
				b.1.14.1	22369
				d.169.1.3	42439
1hnuA	280	1.01e+01	1hnoA	c.14.1.3	61096
1ukz	203	1.10e+01	1zin	c.37.1.1	31840
1howA	373	1.33e+01	1hcl	d.144.1.1	41679
1go5A	69	1.38e+01		a.5.2.3	65410
1jenA	267	1.45e+01	1jenA		
1qklA	127	1.51e+01	1qklA	d.78.1.2	39754
1dofA	403	1.59e+01	1c3cA	a.127.1.1	19429
1gwcA	230	1.75e+01			
1eyeA	280	1.76e+01	1aj2	c.1.21.1	29672
1i7gA	287	1.81e+01			
1fp1D	372	1.99e+01	1fpqA	a.4.5.29	59939
				c.66.1.12	59940
1gv3A	248	2.33e+01			
1knqA	175	2.45e+01			
1lmb3	92	2.52e+01	1lmb3		
1hv2A	99	2.65e+01		d.42.1.1	61287
1a0k	131	2.90e+01	3nul	d.110.1.1	40892
1awcA	110	3.19e+01	1awcA	a.4.5.21	16167
1lliA	92	3.20e+01	1lmb3	a.35.1.2	17025
1jq4A	98	3.30e+01		d.15.4.2	67083
1k8kA	418	3.36e+01		c.55.1.1	68305
				c.55.1.1	68306
2eboA	74	3.45e+01	2eboA	h.3.2.1	45754
3nul	130	3.61e+01	3nul	d.110.1.1	40891
1k3eA	156	3.94e+01		d.198.1.1	68103