# List of top-scoring protein chains for YGR013W.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1v4hA	299	6.01e+00		a.128.1.1	100298
1uf2K	506	6.22e+00			
1nyrA	645	6.58e+00		c.51.1.1	92354
				d.15.10.1	92355
				d.67.1.1	92356
				d.104.1.1	92357
1ytyA	194	7.58e+00			
1zh5A	195	7.61e+00			
1vr3A	191	8.92e+00			
2csiA	76	1.03e+01			
1z1cA	587	1.07e+01			
1tmxA	293	1.11e+01			
1wrvA	308	1.13e+01			
1wl2A	299	1.22e+01			
1gmlA	178	1.36e+01		c.8.5.2	70273
1wl0A	299	1.40e+01			
1mp1A	111	1.44e+01		a.188.1.1	91382
1vkfA	188	1.49e+01		c.1.29.1	108656
1jysA	242	1.73e+01		c.56.2.1	77216
1z5oA	242	1.76e+01			
1z5nA	242	1.78e+01			
2czcA	334	1.78e+01			
1v4eA	299	1.91e+01		a.128.1.1	100296
2fkcA	247	1.92e+01			
1hmuA	700	1.93e+01	1cb8A	a.102.3.2	61089
				b.24.1.1	61090
				b.30.5.2	61091
1zb1A	392	1.98e+01			
1v4iA	299	2.09e+01		a.128.1.1	100299
1r1hA	696	2.24e+01		d.92.1.4	104756
2c2aA	258	2.44e+01			
1wl3A	299	2.48e+01			
1oscA	126	2.59e+01		d.58.5.2	93490
1v4jA	299	2.60e+01		a.128.1.1	100300
1vg4A	299	2.66e+01		a.128.1.1	108602
2bwrA	401	2.67e+01			
1ct9A	553	2.74e+01	1ct9A	c.26.2.1	31616
				d.153.1.1	41834
1xk8A	147	2.78e+01			
1ev0A	58	2.82e+01	1ev0A	d.71.1.1	39594
1nxmA	197	2.86e+01		b.82.1.1	86385
1hnnA	282	2.94e+01		c.66.1.15	65895
1xw8A	252	2.94e+01			
1yz3A	289	2.97e+01			
1v4kA	299	3.00e+01		a.128.1.1	100302
1zkiA	133	3.11e+01			
1twfA	1733	3.15e+01			
1qmjA	132	3.16e+01	1c1lA	b.29.1.3	24210
1iykA	392	3.29e+01		d.108.1.2	76958
				d.108.1.2	76959
1wkzA	299	3.40e+01			
1vg7A	299	3.46e+01		a.128.1.1	108605
1cb8A	678	3.47e+01	1cb8A	a.102.3.2	18849
				b.24.1.1	23898
				b.30.5.2	24422
1gz1A	362	3.64e+01		c.6.1.1	76405
1ocjA	362	3.64e+01		c.6.1.1	86801
1bvwA	360	3.69e+01	1bvwA	c.6.1.1	30668
2bvwA	362	3.71e+01	1bvwA	c.6.1.1	30666
1oc7A	364	3.71e+01		c.6.1.1	86794
1tz7A	505	3.76e+01			
1ktbA	405	3.85e+01		b.71.1.1	72960
				c.1.8.1	72961
1x4qA	92	3.86e+01			
1vg6A	299	3.89e+01		a.128.1.1	108604
2bkaA	242	3.98e+01