# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m6yA 301 2.44e-01 a.60.13.1 78716 c.66.1.23 78717 1l8qA 324 2.15e+00 a.4.12.2 77809 c.37.1.20 77810 1de4C 640 2.16e+00 1cx8B a.48.2.1 17779 c.8.4.1 30760 c.56.5.5 33848 1mp1A 111 2.35e+00 a.188.1.1 91382 1wa5C 960 2.83e+00 1jbwA 428 2.97e+00 c.59.1.2 62860 c.72.2.2 62861 1fgs 428 3.09e+00 1fgs c.59.1.2 33959 c.72.2.2 34962 1twfA 1733 3.20e+00 6tmnE 316 3.29e+00 1hyt d.92.1.2 59071 1f6dA 376 3.39e+00 1f6dA c.87.1.3 35467 1keiA 316 4.04e+00 d.92.1.2 77349 1vgvA 384 4.11e+00 c.87.1.3 100608 1uuqA 440 4.13e+00 c.1.8.3 100015 1hyt 316 4.39e+00 1hyt d.92.1.2 59005 8tlnE 316 4.39e+00 1hyt d.92.1.2 59075 1cb8A 678 5.02e+00 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 2tmnE 316 5.03e+00 1hyt d.92.1.2 59055 1k28A 584 5.63e+00 b.40.8.1 68049 b.108.1.2 68050 d.2.1.3 68051 2ts1 419 5.99e+00 2ts1 c.26.1.1 31564 1i50A 1733 6.17e+00 e.29.1.2 61754 1zkiA 133 6.57e+00 1wovA 250 6.79e+00 1lzlA 323 7.35e+00 c.69.1.2 78306 1gvfA 286 7.97e+00 c.1.10.2 70599 2basA 431 8.08e+00 1pgjA 478 8.26e+00 2pgd a.100.1.1 18783 c.2.1.6 30195 1hm2A 700 8.77e+00 1cb8A a.102.3.2 61083 b.24.1.1 61084 b.30.5.2 61085 1wxcA 281 1.03e+01 2f02A 323 1.12e+01 2cvxA 888 1.13e+01 1t6jA 714 1.17e+01 2awdA 323 1.31e+01 1ynmA 247 1.36e+01 2fkcA 247 1.36e+01 2d7vA 162 1.43e+01 16vpA 366 1.48e+01 16vpA d.180.1.1 42601 1jqiA 388 1.56e+01 a.29.3.1 67087 e.6.1.1 67088 2bneA 241 1.57e+01 1mu5A 471 1.62e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1js3A 486 1.66e+01 c.67.1.6 67215 2hgsA 474 1.69e+01 2hgsA c.30.1.4 31722 d.142.1.6 75997 1clxA 347 1.70e+01 1taxA c.1.8.3 28899 1sqsA 242 1.78e+01 c.23.5.5 98968 1sxrA 183 1.81e+01 d.118.1.1 106101 1d8cA 723 1.83e+01 1d8cA c.1.13.1 29325 1lehA 364 1.89e+01 1bw9A c.2.1.7 30268 c.58.1.1 33916 2cq2A 114 1.90e+01 1jgcA 161 1.94e+01 a.25.1.1 66673 1w32A 348 1.95e+01 1b9hA 388 1.95e+01 1b9hA c.67.1.4 34488 1e5rA 290 2.06e+01 1e5rA b.82.2.4 59276 2es4D 332 2.17e+01 1rzuA 485 2.20e+01 c.87.1.8 105140 1rkeA 262 2.21e+01 a.24.9.1 97608 a.24.9.1 97609 1e4mM 501 2.24e+01 1e70M c.1.8.4 59226 1ukvY 206 2.27e+01 c.37.1.8 107918 1wmaA 276 2.30e+01 1qdbA 473 2.37e+01 1qdbA a.138.1.3 19688 1j0hA 588 2.39e+01 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1y6iA 233 2.43e+01 1b1yA 500 2.46e+01 1byb c.1.8.1 28796 2bcgY 206 2.49e+01 1sqc 631 2.51e+01 2sqcA a.102.4.2 18858 a.102.4.2 18859 1va6A 518 2.53e+01 1tpt 440 2.55e+01 1brwA a.46.2.1 17763 c.27.1.1 31627 d.41.3.1 38625 2sqcA 631 2.58e+01 2sqcA a.102.4.2 18854 a.102.4.2 18855 1uruA 244 2.58e+01 h.4.14.1 99835 1wmwA 330 2.66e+01 1nxuA 333 2.72e+01 c.122.1.1 86389 137lA 164 2.73e+01 1l92 d.2.1.3 36791 1x8yA 86 2.80e+01 1z23A 163 2.84e+01 2al6A 375 2.87e+01 1r8iA 213 2.91e+01 a.8.7.1 97239 1m0kA 262 2.91e+01 f.13.1.1 78344 1ydiA 263 2.94e+01 1y2mA 716 2.97e+01 1v58A 241 2.98e+01 c.47.1.9 108371 d.17.3.1 108372 1lkcA 364 2.99e+01 c.67.1.1 73978 1kgbA 231 3.02e+01 f.13.1.1 68581 1jqzA 146 3.02e+01 b.42.1.1 67109 1m16A 146 3.04e+01 b.42.1.1 91164 1e6qM 501 3.06e+01 1e70M c.1.8.4 28920 180lA 164 3.08e+01 1l92 d.2.1.3 36867 139l 164 3.13e+01 1l92 d.2.1.3 36643 2az4A 429 3.23e+01 1rg8A 146 3.23e+01 1jt7A 146 3.26e+01 b.42.1.1 67255 1k4tA 592 3.27e+01 a.2.8.1 77263 d.163.1.2 77264 e.15.1.1 77265 1f6yA 262 3.28e+01 1f6yA c.1.21.2 29673 1klfB 279 3.31e+01 b.2.3.2 72684 b.2.3.2 72685 1itcA 516 3.34e+01 b.3.1.1 83705 c.1.8.1 83706 1sfkA 76 3.36e+01 a.190.1.1 105488 1nq6A 302 3.39e+01 c.1.8.3 92046 2at9 247 3.44e+01 1c3wA f.13.1.1 43427 1dqaA 467 3.45e+01 1dqaA d.58.20.1 39364 d.179.1.1 42585 1qhbA 596 3.50e+01 1qhbA a.111.1.2 19055 1arzC 273 3.51e+01 1drw c.2.1.3 30061 d.81.1.3 39976 1o60A 292 3.51e+01 c.1.10.4 92532 1u6zA 513 3.55e+01 1iv8A 720 3.57e+01 b.71.1.1 76842 c.1.8.1 76843 2acvA 463 3.57e+01 1dqaC 467 3.59e+01 1dqaA d.58.20.1 39366 d.179.1.1 42587 1ev0A 58 3.64e+01 1ev0A d.71.1.1 39594 1hw8A 467 3.67e+01 1dqaA d.58.20.1 61298 d.179.1.1 61299 1xngA 268 3.70e+01 1gmlA 178 3.72e+01 c.8.5.2 70273 1lc5A 364 3.73e+01 c.67.1.1 73827 1tq4A 413 3.76e+01 c.37.1.8 107201 2cujA 108 3.93e+01 1dih 273 3.96e+01 1drw c.2.1.3 30056 d.81.1.3 39971