# List of top-scoring protein chains for t2k-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1n7sC 79 1.97e-14 h.1.15.1 80273 1sfcC 83 2.14e-14 1sfcC h.1.15.1 45645 1l4aD 87 4.72e-14 h.1.15.1 73562 1sfcD 87 5.02e-14 1sfcD h.1.15.1 45646 1jthA 82 4.16e-13 h.1.15.1 67270 1kilD 66 1.81e-12 h.1.15.1 72521 1n7sD 66 1.88e-12 h.1.15.1 80274 1gl2C 65 7.23e-08 h.1.15.1 65280 1gl2D 65 2.38e-07 h.1.15.1 65281 1n7sB 68 1.65e-02 h.1.15.1 80272 1hvvA 75 1.67e-02 1hvvA h.1.15.1 45639 1sfcB 83 2.06e-02 1sfcB h.1.15.1 45644 1jthD 77 2.12e-02 h.1.15.1 67273 1jthB 77 2.90e-02 h.1.15.1 67271 1gl2B 65 3.15e-02 h.1.15.1 65279 1xsm 390 3.07e-01 1xsm a.25.1.2 16804 1h0oA 390 5.37e-01 a.25.1.2 70845 1dn1B 267 5.89e-01 1dn1B a.47.2.1 17771 1w68A 390 1.13e+00 1ihgA 370 1.69e+00 2cpl a.118.8.1 62380 b.62.1.1 62381 1ih7A 903 1.94e+00 1clqA c.55.3.5 62375 e.8.1.1 62376 1wduA 245 2.52e+00 1ab4 477 2.80e+00 1ab4 e.11.1.1 43251 1s35A 214 3.36e+00 1jeyB 565 3.39e+00 1jeqB e.31.1.2 62925 1clqA 903 3.50e+00 1clqA c.55.3.5 33717 e.8.1.1 43006 1e7uA 961 3.74e+00 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1jeqB 565 4.22e+00 1jeqB e.31.1.2 62922 1jadA 251 5.06e+00 h.4.10.1 66461 1p9uA 302 5.74e+00 b.47.1.4 88001 1dxrL 273 6.04e+00 6prcL f.26.1.1 43431 1ni3A 392 6.24e+00 c.37.1.8 80531 d.15.10.2 80532 1lrzA 426 6.91e+00 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1e8xA 961 6.96e+00 1e8xA a.118.1.6 19148 b.7.1.1 23183 d.15.1.5 37631 d.144.1.4 41711 1oq9A 363 7.14e+00 a.25.1.2 87257 1lvoA 302 8.07e+00 b.47.1.4 74284 1gln 468 8.08e+00 1gln a.97.1.1 18752 c.26.1.1 31588 1icpA 376 8.58e+00 1oyc c.1.4.1 62270 6prcL 273 8.83e+00 6prcL f.26.1.1 43434 1oxjA 173 9.15e+00 a.60.1.2 87517 a.118.1.13 87518 1n7zA 334 9.46e+00 b.127.1.1 85380 1sziA 247 9.49e+00 1xfjA 261 9.54e+00 1umwA 237 9.80e+00 1prgA 270 1.05e+01 2prgA a.123.1.1 19314 1j09A 468 1.10e+01 a.97.1.1 77025 c.26.1.1 77026 1hy0A 466 1.16e+01 1auwA a.127.1.1 61392 1gj7B 253 1.17e+01 1c5yB 253 1.23e+01 5ptp 1k7wA 468 1.25e+01 a.127.1.1 72130 1ic2A 81 1.28e+01 h.1.5.1 62247 1aozA 552 1.33e+01 1aozA b.6.1.3 23124 b.6.1.3 23125 b.6.1.3 23126 1auwA 468 1.36e+01 1auwA a.127.1.1 19416 1segA 64 1.43e+01 1fm9D 272 1.54e+01 2prgA a.123.1.1 19313 1aho 64 1.57e+01 1aho g.3.7.1 44127 1i50C 318 1.60e+01 d.74.3.1 61756 d.181.1.1 61757 1ads 315 1.64e+01 1frb c.1.7.1 28671 2acr 315 1.67e+01 1frb c.1.7.1 28674 1el3A 316 1.68e+01 1frb c.1.7.1 28672 1pwmA 316 1.75e+01 1bg7 176 1.79e+01 2fha a.25.1.1 16686 1n8yC 608 1.87e+01 c.10.2.5 80314 c.10.2.5 80315 g.3.9.1 80316 g.3.9.1 80317 1spa 396 1.89e+01 1ajsA c.67.1.1 34291 1agjA 242 1.90e+01 1agjA b.47.1.1 25827 1auiA 521 1.95e+01 1auiA d.159.1.3 42085 5eat 548 1.95e+01 5eat a.102.4.1 18853 a.128.1.3 19445 1ars 396 1.97e+01 1ajsA c.67.1.1 34287 1oyb 400 1.99e+01 1oyc c.1.4.1 28602 1h6gA 256 2.06e+01 1h6gA a.24.9.1 60669 a.24.9.1 60670 1k8tA 510 2.07e+01 e.41.1.1 68316 1fhoA 119 2.07e+01 1fhoA b.55.1.1 26982 1ahxA 396 2.10e+01 1ajsA c.67.1.1 34293 2prgA 271 2.11e+01 2prgA a.123.1.1 19311 1jqiA 388 2.13e+01 a.29.3.1 67087 e.6.1.1 67088 1txuA 273 2.13e+01 1us0A 316 2.16e+01 7catA 506 2.21e+01 1cf9A e.5.1.1 42781 1iyjB 817 2.23e+01 a.170.1.1 76948 a.171.1.1 76949 b.40.4.3 76950 b.40.4.3 76951 b.40.4.3 76952 5reqA 727 2.24e+01 1reqA c.1.19.1 29632 c.23.6.1 31259 1e8yA 966 2.24e+01 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1reqA 727 2.32e+01 1reqA c.1.19.1 29620 c.23.6.1 31247 1art 396 2.32e+01 1ajsA c.67.1.1 34285 1keyA 235 2.35e+01 a.118.16.1 72389 7reqA 727 2.35e+01 1reqA c.1.19.1 29616 c.23.6.1 31243 1d7uA 433 2.40e+01 2dkb c.67.1.4 34439 1qisA 396 2.41e+01 1ajsA c.67.1.1 34284 1pfzA 380 2.43e+01 1smrA b.50.1.2 26881 1fr0A 125 2.48e+01 2a0b a.24.10.1 59996 1oxnA 140 2.49e+01 2dkb 433 2.54e+01 2dkb c.67.1.4 34438 1dmr 823 2.59e+01 1dmr b.52.2.2 26904 c.81.1.1 35312 1bcfA 158 2.60e+01 1bcfA a.25.1.1 16648 1ex7A 186 2.64e+01 1gky c.37.1.1 59537 1bywA 110 2.68e+01 1bywA d.110.3.6 40912 1hxs2 272 2.68e+01 1ehkA 562 2.69e+01 1ehkA f.24.1.1 43624 1gy8A 397 2.70e+01 c.2.1.2 83376 1nrlA 316 2.72e+01 1qh7A 207 2.74e+01 1axkA b.29.1.11 24317 1g0uL 241 2.75e+01 d.153.1.4 41894 1h4gA 207 2.76e+01 b.29.1.11 70863 1oya 400 2.77e+01 1oyc c.1.4.1 28604 1tqhA 247 2.79e+01 1chuA 540 2.82e+01 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1qwlA 505 2.88e+01 1k42A 168 3.01e+01 b.18.1.14 72032 1gky 187 3.01e+01 1gky c.37.1.1 31839 1oyc 400 3.01e+01 1oyc c.1.4.1 28603 1glcG 501 3.14e+01 1glcG c.55.1.4 33519 c.55.1.4 33520 1sq9A 397 3.21e+01 1orjA 130 3.21e+01 1siqA 392 3.22e+01 1kjvA 284 3.22e+01 b.1.1.2 77421 d.19.1.1 77422 1g59A 468 3.33e+01 a.97.1.1 60257 c.26.1.1 60258 1mwvA 714 3.37e+01 a.93.1.3 85161 a.93.1.3 85162 3cln 148 3.37e+01 1cll a.39.1.5 17286 1vcaA 202 3.44e+01 1vcaA b.1.1.3 21649 b.1.1.4 21685 1mqsA 671 3.47e+01 e.25.1.1 79414 1cll 148 3.53e+01 1cll a.39.1.5 17263 2a0b 125 3.61e+01 2a0b a.24.10.1 16630 1t2wA 145 3.64e+01 1itkA 731 3.64e+01 a.93.1.3 71417 a.93.1.3 71418 1j7nA 776 3.64e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1dcnD 436 3.66e+01 1auwA a.127.1.1 19423 1qfhA 212 3.66e+01 1qfhA b.1.18.10 21893 b.1.18.10 21894 1jvpP 298 3.69e+01 d.144.1.7 67371 1eljA 381 3.72e+01 4mbp c.94.1.1 35791 1o2dA 371 3.79e+01 e.22.1.2 86591 1rdr 461 3.80e+01 1rdr e.8.1.4 43116 1h49A 512 3.81e+01 c.1.8.4 83477 1tw6A 133 3.86e+01 1ovnA 248 3.89e+01 1dguA 183 3.90e+01 1dguA a.39.1.5 17333 1rcwA 231 3.94e+01 1xc3A 302 3.95e+01