# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1n7sC 79 4.63e-13 h.1.15.1 80273 1sfcC 83 5.17e-13 1sfcC h.1.15.1 45645 1l4aD 87 7.17e-13 h.1.15.1 73562 1sfcD 87 1.88e-12 1sfcD h.1.15.1 45646 1jthA 82 7.83e-12 h.1.15.1 67270 1n7sD 66 2.65e-11 h.1.15.1 80274 1kilD 66 4.04e-11 h.1.15.1 72521 1gl2C 65 2.88e-07 h.1.15.1 65280 1gl2D 65 1.39e-06 h.1.15.1 65281 1n7sB 68 2.88e-02 h.1.15.1 80272 1sfcB 83 3.21e-02 1sfcB h.1.15.1 45644 1hvvA 75 3.28e-02 1hvvA h.1.15.1 45639 1jthD 77 3.55e-02 h.1.15.1 67273 1jthB 77 4.14e-02 h.1.15.1 67271 1gl2B 65 5.94e-02 h.1.15.1 65279 1dn1B 267 3.32e-01 1dn1B a.47.2.1 17771 1tqhA 247 7.85e-01 1bt3A 345 1.76e+00 1bt3A a.86.1.2 18507 2aat 396 2.22e+00 1ajsA c.67.1.1 34348 1r1dA 247 2.40e+00 1k7wA 468 2.61e+00 a.127.1.1 72130 1jeqB 565 3.06e+00 1jeqB e.31.1.2 62922 1ni3A 392 3.20e+00 c.37.1.8 80531 d.15.10.2 80532 1auwA 468 3.50e+00 1auwA a.127.1.1 19416 1oxjA 173 3.76e+00 a.60.1.2 87517 a.118.1.13 87518 1hy0A 466 3.95e+00 1auwA a.127.1.1 61392 1gy8A 397 3.97e+00 c.2.1.2 83376 1jadA 251 4.52e+00 h.4.10.1 66461 1s35A 214 4.88e+00 1k8eA 345 5.46e+00 1o17A 345 5.46e+00 a.46.2.1 80765 c.27.1.1 80766 1vjs 483 6.47e+00 1bli b.71.1.1 27714 c.1.8.1 28701 1kjvA 284 6.56e+00 b.1.1.2 77421 d.19.1.1 77422 1xsm 390 6.64e+00 1xsm a.25.1.2 16804 1prgA 270 6.70e+00 2prgA a.123.1.1 19314 1fm9D 272 6.91e+00 2prgA a.123.1.1 19313 1txuA 273 7.11e+00 2prgA 271 7.99e+00 2prgA a.123.1.1 19311 1j7lA 264 8.10e+00 d.144.1.6 62697 1v8gA 329 8.51e+00 1bli 483 8.91e+00 1bli b.71.1.1 27715 c.1.8.1 28702 1bywA 110 9.22e+00 1bywA d.110.3.6 40912 1dxrL 273 9.56e+00 6prcL f.26.1.1 43431 1d7uA 433 1.04e+01 2dkb c.67.1.4 34439 1xfjA 261 1.04e+01 1sziA 247 1.22e+01 1dgsA 667 1.24e+01 1dgsA a.60.2.2 17963 b.40.4.6 25365 d.142.2.2 41581 1nd4A 264 1.30e+01 1dcnD 436 1.35e+01 1auwA a.127.1.1 19423 1p49A 562 1.36e+01 1icpA 376 1.38e+01 1oyc c.1.4.1 62270 1jeyB 565 1.41e+01 1jeqB e.31.1.2 62925 1h0oA 390 1.44e+01 a.25.1.2 70845 1rdr 461 1.52e+01 1rdr e.8.1.4 43116 1aozA 552 1.55e+01 1aozA b.6.1.3 23124 b.6.1.3 23125 b.6.1.3 23126 6prcL 273 1.56e+01 6prcL f.26.1.1 43434 1b06A 210 1.58e+01 1avmA a.2.11.1 15740 d.44.1.1 38737 1i50C 318 1.59e+01 d.74.3.1 61756 d.181.1.1 61757 1itkA 731 1.80e+01 a.93.1.3 71417 a.93.1.3 71418 1jalA 363 1.84e+01 c.37.1.8 84138 d.15.10.2 84139 1ih7A 903 1.85e+01 1clqA c.55.3.5 62375 e.8.1.1 62376 1bg7 176 1.91e+01 2fha a.25.1.1 16686 1ab4 477 1.91e+01 1ab4 e.11.1.1 43251 1spa 396 1.92e+01 1ajsA c.67.1.1 34291 1clqA 903 1.93e+01 1clqA c.55.3.5 33717 e.8.1.1 43006 2dkb 433 1.98e+01 2dkb c.67.1.4 34438 2tysB 397 2.00e+01 2tysB c.79.1.1 35272 1bcfA 158 2.03e+01 1bcfA a.25.1.1 16648 1et0A 269 2.03e+01 1et0A e.17.1.1 43289 1efm 393 2.05e+01 1efcA c.37.1.8 64732 1chuA 540 2.05e+01 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1o2dA 371 2.06e+01 e.22.1.2 86591 1qpxA 218 2.10e+01 1qpxA b.1.11.1 22318 b.7.2.1 23200 1b0pA 1231 2.10e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1pfzA 380 2.11e+01 1smrA b.50.1.2 26881 1w68A 390 2.12e+01 1o5kA 306 2.13e+01 1j7iA 264 2.14e+01 1j7iA d.144.1.6 62694 1reqA 727 2.23e+01 1reqA c.1.19.1 29620 c.23.6.1 31247 1kekA 1231 2.27e+01 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1aye 401 2.32e+01 1aye c.56.5.1 33824 d.58.3.1 39065 1art 396 2.36e+01 1ajsA c.67.1.1 34285 1ic2A 81 2.39e+01 h.1.5.1 62247 1qopB 396 2.44e+01 2tysB c.79.1.1 35270 1eqcA 394 2.45e+01 1cz1A c.1.8.3 28811 3pghA 587 2.47e+01 1cqeA a.93.1.2 18726 g.3.11.1 44269 1oq9A 363 2.48e+01 a.25.1.2 87257 7reqA 727 2.48e+01 1reqA c.1.19.1 29616 c.23.6.1 31243 1cz1A 394 2.49e+01 1cz1A c.1.8.3 28839 5reqA 727 2.50e+01 1reqA c.1.19.1 29632 c.23.6.1 31259 1dixA 208 2.56e+01 1bk7A d.124.1.1 41122 1aho 64 2.59e+01 1aho g.3.7.1 44127 1j5rA 371 2.60e+01 1wduA 245 2.60e+01 1dtdA 303 2.61e+01 1aye c.56.5.1 33823 1qisA 396 2.65e+01 1ajsA c.67.1.1 34284 1segA 64 2.77e+01 1k8yB 396 2.83e+01 c.79.1.1 72184 1ajsA 412 3.02e+01 1ajsA c.67.1.1 34276 1k92A 455 3.14e+01 c.26.2.1 68325 d.210.1.1 68326 1esc 306 3.19e+01 1esc c.23.10.1 31334 1nrlA 316 3.25e+01 1h6kA 757 3.27e+01 a.118.1.2 60675 a.118.1.2 60676 a.118.1.2 60677 1tvzA 388 3.40e+01 1ahxA 396 3.43e+01 1ajsA c.67.1.1 34293 1bksB 397 3.47e+01 2tysB c.79.1.1 35285 1keyA 235 3.52e+01 a.118.16.1 72389 1dcnA 424 3.55e+01 1auwA a.127.1.1 19420 1psdA 409 3.63e+01 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 1bf2 750 3.68e+01 1bf2 b.1.18.2 21860 b.71.1.1 27787 c.1.8.1 28774 1kv7A 488 3.74e+01 b.6.1.3 68873 b.6.1.3 68874 b.6.1.3 68875 1k47A 337 3.79e+01 d.14.1.5 72040 d.58.26.4 72041