# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1kkoA	413	7.33e-01		c.1.11.2	68675
				d.54.1.1	68676
1jjfA	268	1.49e+00		c.69.1.2	66765
1gkkA	297	2.37e+00		c.69.1.2	65248
1gklA	297	3.30e+00		c.69.1.2	65250
1efdN	266	6.70e+00	1efdN	c.92.2.1	35597
1poiA	317	7.59e+00	1poiA	c.63.1.1	34153
1g5gB	481	9.01e+00		f.12.1.1	65157
				h.3.2.1	65158
1exeA	99	9.29e+00	1huuA	a.55.1.1	17906
1jcv	153	1.02e+01	1mfmA	b.1.8.1	22279
1b06A	210	1.10e+01	1avmA	a.2.11.1	15740
				d.44.1.1	38737
1ah6	220	1.19e+01	1yer	d.122.1.1	41094
1azwA	313	1.46e+01	1qtrA	c.69.1.7	34658
1ghtA	105	1.46e+01	2rslA	c.53.1.1	60526
1iknD	236	1.57e+01	1iknD	a.118.2.1	19171
1ha9A	34	1.68e+01	1ha9A	g.3.2.1	60876
1aun	208	2.04e+01	1thv	b.25.1.1	23900
1poiB	260	2.04e+01	1poiB	c.63.1.1	34155
1jj2Z	56	2.21e+01	1ffkX	g.41.8.2	63111
1dabA	539	2.55e+01	1dabA	b.80.1.7	28049
1k8cA	322	2.71e+01			
1le6A	123	2.73e+01			
1m1cA	680	2.77e+01			
1ae7	119	2.82e+01	1poa	a.133.1.2	19553
1a4iA	301	3.04e+01	1a4iA	c.2.1.7	30278
				c.58.1.2	33926
3cms	323	3.10e+01	1smrA	b.50.1.2	26865
1a0hA	159	3.21e+01	1a0hA	b.47.1.2	26229
				g.14.1.1	44655
1g8yA	279	3.40e+01	1g8yA	c.37.1.11	32302
1ezvG	93	3.52e+01	1ezvG	f.2.1.8	59551
1rpxA	230	3.52e+01	1rpxA	c.1.2.2	28536
2rslA	140	3.54e+01	2rslA	c.53.1.1	33345
4cms	323	3.56e+01	1smrA	b.50.1.2	26866
1fcqA	350	3.77e+01		c.1.8.9	65006