# List of top-scoring protein chains for t2k-100-30-str hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
2hfh	109	8.09e+00	2hfh	a.4.5.14	16145
1jjfA	268	9.76e+00		c.69.1.2	66765
1iwgA	1053	1.02e+01			
1jcv	153	1.05e+01	1mfmA	b.1.8.1	22279
1g8yA	279	1.05e+01	1g8yA	c.37.1.11	32302
1efdN	266	1.39e+01	1efdN	c.92.2.1	35597
1jyrA	96	1.60e+01			
2hrvA	142	1.71e+01	2hrvA	b.47.1.4	26429
1exeA	99	1.79e+01	1huuA	a.55.1.1	17906
1fcqA	350	1.85e+01		c.1.8.9	65006
1m1cA	680	1.87e+01			
1i16	130	2.10e+01	1i16	b.36.1.2	24787
1g5gB	481	2.26e+01		f.12.1.1	65157
				h.3.2.1	65158
1klt	226	2.30e+01	5ptp	b.47.1.2	26300
1hlgA	371	2.34e+01	1hlgA	c.69.1.6	34656
1ffkX	56	2.53e+01	1ffkX	g.41.8.2	45316
1d2kA	392	2.68e+01	1d2kA	c.1.8.5	29008
				d.26.3.1	38442
1rb9	53	2.75e+01	1rb9	g.41.5.1	45214
1ae7	119	2.80e+01	1poa	a.133.1.2	19553
8rxnA	52	2.91e+01	1rb9	g.41.5.1	45215
1qvcA	145	2.95e+01	3ullA	b.40.4.3	25284
1uteA	313	3.10e+01	1uteA	d.159.1.1	42078
1a4iB	301	3.17e+01	1a4iA	c.2.1.7	30279
				c.58.1.2	33927
1diaA	306	3.34e+01	1a4iA	c.2.1.7	30280
				c.58.1.2	33928
4cms	323	3.35e+01	1smrA	b.50.1.2	26866
1gg6B	131	3.37e+01	5ptp		
1a4iA	301	3.44e+01	1a4iA	c.2.1.7	30278
				c.58.1.2	33926
3cms	323	3.45e+01	1smrA	b.50.1.2	26865
1a0hA	159	3.48e+01	1a0hA	b.47.1.2	26229
				g.14.1.1	44655
1bam	213	3.70e+01	1bam	c.52.1.3	33285
1ah6	220	3.73e+01	1yer	d.122.1.1	41094
1b06A	210	3.79e+01	1avmA	a.2.11.1	15740
				d.44.1.1	38737
1mdc	133	3.82e+01	1hmt	b.60.1.2	27198