# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jjfA 268 9.49e-01 c.69.1.2 66765 1ghtA 105 1.31e+00 2rslA c.53.1.1 60526 1azwA 313 2.59e+00 1qtrA c.69.1.7 34658 1poiA 317 2.83e+00 1poiA c.63.1.1 34153 2hfh 109 2.89e+00 2hfh a.4.5.14 16145 1gkkA 297 2.98e+00 c.69.1.2 65248 1gklA 297 3.18e+00 c.69.1.2 65250 1ae7 119 3.81e+00 1poa a.133.1.2 19553 1b06A 210 3.91e+00 1avmA a.2.11.1 15740 d.44.1.1 38737 1le6A 123 4.16e+00 1gdtA 183 4.60e+00 2rslA a.4.1.2 16021 c.53.1.1 33348 2rslA 140 6.28e+00 2rslA c.53.1.1 33345 1exeA 99 9.04e+00 1huuA a.55.1.1 17906 1iknD 236 9.64e+00 1iknD a.118.2.1 19171 1do0A 442 9.79e+00 1do0A c.37.1.13 32432 1pir 124 1.10e+01 1poa a.133.1.2 19611 1poa 118 1.30e+01 1poa a.133.1.2 19514 1kkoA 413 1.46e+01 c.1.11.2 68675 d.54.1.1 68676 1hn4A 131 1.49e+01 a.133.1.2 65893 5ukdA 194 1.69e+01 1zin c.37.1.1 31851 1qf9A 194 1.69e+01 1zin c.37.1.1 31848 1ek6A 348 1.69e+01 1xel c.2.1.2 29800 1i3kA 348 1.71e+01 1xel c.2.1.2 61595 1ffkX 56 1.74e+01 1ffkX g.41.8.2 45316 1k6dA 220 1.76e+01 1jcv 153 1.77e+01 1mfmA b.1.8.1 22279 1fcqA 350 1.94e+01 c.1.8.9 65006 1b93B 152 1.96e+01 1b93A c.24.1.2 31508 1g8yA 279 1.98e+01 1g8yA c.37.1.11 32302 1mku 123 2.03e+01 1poa a.133.1.2 19590 1b93A 152 2.05e+01 1b93A c.24.1.2 31507 1qvcA 145 2.19e+01 3ullA b.40.4.3 25284 1k8cA 322 2.20e+01 4bp2 130 2.22e+01 1poa a.133.1.2 19584 1uteA 313 2.31e+01 1uteA d.159.1.1 42078 1bndA 119 2.39e+01 1bndA g.17.1.3 44793 1jidA 128 2.54e+01 d.201.1.1 66735 1g4iA 123 2.54e+01 1poa a.133.1.2 60241 2pspA 106 2.62e+01 2pspA g.16.1.1 44730 g.16.1.1 44731 1une 123 2.63e+01 1poa a.133.1.2 19583 1iirA 415 2.77e+01 1iirA c.87.1.5 62453 1jj2O 148 2.82e+01 1ffkM a.94.1.1 63100 1jyrA 96 2.94e+01 1ffkM 148 3.03e+01 1ffkM a.94.1.1 18740 1pcp 106 3.04e+01 2pspA g.16.1.1 44742 g.16.1.1 44743 1qtrA 317 3.04e+01 1qtrA c.69.1.7 34660 1poiB 260 3.15e+01 1poiB c.63.1.1 34155 1rpxA 230 3.26e+01 1rpxA c.1.2.2 28536 1ha9A 34 3.35e+01 1ha9A g.3.2.1 60876 1prcC 336 3.35e+01 6prcC a.138.1.2 19674 1jatB 138 3.37e+01 1jatB d.20.1.1 62819 6prcC 336 3.44e+01 6prcC a.138.1.2 19671 1dxrC 336 3.49e+01 6prcC a.138.1.2 19670 1dabA 539 3.58e+01 1dabA b.80.1.7 28049 1a4iB 301 3.62e+01 1a4iA c.2.1.7 30279 c.58.1.2 33927 1glm 470 3.74e+01 1ayx a.102.1.1 18821 1klt 226 3.76e+01 5ptp b.47.1.2 26300 3pghA 587 3.82e+01 1cqeA a.93.1.2 18726 g.3.11.1 44269 1ad1A 266 3.86e+01 1aj2 c.1.21.1 29668 1rb9 53 3.88e+01 1rb9 g.41.5.1 45214 1g5gB 481 3.93e+01 f.12.1.1 65157 h.3.2.1 65158