Best Alignments for YGR004W

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1kluD/YGR004W-1kluD-local-str-0.3-adpstyle5.a2m 1kluD/YGR004W-1kluD-local-str-0.3-adpstyle5.al 8.5931e+001.8943e+00
1guxB/YGR004W-1guxB-local-str-0.3-adpstyle5.a2m 1guxB/YGR004W-1guxB-local-str-0.3-adpstyle5.al 1.2209e+014.9342e+00 1guxB a.74.1.3
1cec/YGR004W-1cec-local-str-0.3-adpstyle5.a2m 1cec/YGR004W-1cec-local-str-0.3-adpstyle5.al 1.3181e+011.0082e+01 1ceo c.1.8.3
1jsqA/YGR004W-1jsqA-global-str-1.5-adpstyle5.a2m 1jsqA/YGR004W-1jsqA-global-str-1.5-adpstyle5.al 1.5242e+014.9462e-05
1bkdS/YGR004W-1bkdS-local-str-0.3-adpstyle5.a2m 1bkdS/YGR004W-1bkdS-local-str-0.3-adpstyle5.al 1.5406e+011.0999e+01 1bkdS a.117.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001