Best Alignments for YGL228W

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1abwA/YGL228W-1abwA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 6.8275e+006.8576e-01 1abwA a.1.1.2
1abwA/YGL228W-1abwA-local-str-0.3-adpstyle5.a2m 6.8275e+001.4210e+00 1abwA a.1.1.2
1abwA/YGL228W-1abwA-local-str2-0.3-adpstyle5.a2m 6.8275e+001.4372e+00 1abwA a.1.1.2
1abwA/YGL228W-1abwA-local-dssp-ebghstl-0.3-adpstyle5.a2m 6.8275e+001.6136e+00 1abwA a.1.1.2
1abwA/1abwA-YGL228W-fssp-global-adpstyle5.a2m 6.8275e+002.1777e+00 1abwA a.1.1.2
1abwA/1abwA-YGL228W-fssp-local-adpstyle5.a2m 6.8275e+002.2990e+00 1abwA a.1.1.2
1abwA/YGL228W-1abwA-local-str-1.5-adpstyle5.a2m 6.8275e+002.9167e+00 1abwA a.1.1.2
1abwA/YGL228W-1abwA-global-str-1.5-adpstyle5.a2m 6.8275e+003.0814e+00 1abwA a.1.1.2
1abwA/YGL228W-1abwA-local-stride-ebghtl-0.3-adpstyle5.a2m 6.8275e+003.1109e+00 1abwA a.1.1.2
1flcB/1flcB-YGL228W-fssp-global-adpstyle5.a2m 2.8217e+013.3772e+00 1flcB h.3.1.1
1abwA/YGL228W-1abwA-local-str2-1.5-adpstyle5.a2m 6.8275e+004.6676e+00 1abwA a.1.1.2
1abwA/YGL228W-1abwA-local-alpha-0.3-adpstyle5.a2m 6.8275e+005.3326e+00 1abwA a.1.1.2
1flcB/YGL228W-1flcB-global-str2-1.5-adpstyle5.a2m 2.8217e+015.4154e+00 1flcB h.3.1.1
1abwA/1abwA-YGL228W-global-adpstyle5.a2m 6.8275e+005.4971e+00 1abwA a.1.1.2
1abwA/1abwA-YGL228W-global-adpstyle1.a2m 6.8275e+005.4971e+00 1abwA a.1.1.2
1abwA/YGL228W-1abwA-global-str2-1.5-adpstyle5.a2m 6.8275e+005.8422e+00 1abwA a.1.1.2
1fqvB/1fqvD-YGL228W-fssp-global-adpstyle5.a2m 3.6385e+016.3605e+00 1fqvD d.42.1.1
a.157.1.1
1lo0L/YGL228W-1lo0L-global-adpstyle5.a2m 2.1970e+016.7329e+00 b.1.1.2
b.1.1.1
1lo0L/YGL228W-1lo0L-global-adpstyle1.a2m 2.1970e+016.7329e+00 b.1.1.2
b.1.1.1
1flcB/YGL228W-1flcB-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 2.8217e+018.6303e+00 1flcB h.3.1.1
1flcB/1flcB-YGL228W-fssp-local-adpstyle5.a2m 2.8217e+018.7488e+00 1flcB h.3.1.1
1g0vA/1smrA-YGL228W-fssp-local-adpstyle5.a2m 3.0538e+011.0185e+01 1smrA b.50.1.2
1g0vA/1smrA-YGL228W-fssp-global-adpstyle5.a2m 3.0538e+011.0296e+01 1smrA b.50.1.2
1abwA/YGL228W-1abwA-local-adpstyle1.a2m 6.8275e+001.1054e+01 1abwA a.1.1.2
1abwA/YGL228W-1abwA-local-adpstyle5.a2m 6.8275e+001.1054e+01 1abwA a.1.1.2
2jxrA/1smrA-YGL228W-fssp-local-adpstyle5.a2m 3.4450e+011.1143e+01 1smrA b.50.1.2
2jxrA/1smrA-YGL228W-fssp-global-adpstyle5.a2m 3.4450e+011.1585e+01 1smrA b.50.1.2
1fqvB/1fqvD-YGL228W-fssp-local-adpstyle5.a2m 3.6385e+011.1797e+01 1fqvD d.42.1.1
a.157.1.1
1flcB/YGL228W-1flcB-global-str2-0.3-adpstyle5.a2m 2.8217e+011.4383e+01 1flcB h.3.1.1
1iucA/YGL228W-1iucA-local-adpstyle5.a2m 1.9506e+011.6216e+01
1iucA/YGL228W-1iucA-local-adpstyle1.a2m 1.9506e+011.6216e+01
1nexA/YGL228W-1nexA-local-adpstyle1.a2m 1.9806e+011.6508e+01 d.42.1.1
a.157.1.1
1nexA/YGL228W-1nexA-local-adpstyle5.a2m 1.9806e+011.6508e+01 d.42.1.1
a.157.1.1
1abwA/YGL228W-1abwA-global-alpha-0.3-adpstyle5.a2m 6.8275e+001.6970e+01 1abwA a.1.1.2
1flcB/YGL228W-1flcB-local-alpha-0.3-adpstyle5.a2m 2.8217e+011.7165e+01 1flcB h.3.1.1
1abwA/1abwA-YGL228W-local-adpstyle1.a2m 6.8275e+001.7321e+01 1abwA a.1.1.2
1abwA/1abwA-YGL228W-local-adpstyle5.a2m 6.8275e+001.7321e+01 1abwA a.1.1.2
1flcB/YGL228W-1flcB-global-str-0.3-adpstyle5.a2m 2.8217e+011.7934e+01 1flcB h.3.1.1
1lo0L/YGL228W-1lo0L-local-adpstyle5.a2m 2.1970e+011.8585e+01 b.1.1.2
b.1.1.1
1lo0L/YGL228W-1lo0L-local-adpstyle1.a2m 2.1970e+011.8585e+01 b.1.1.2
b.1.1.1
1abwA/YGL228W-1abwA-simplesw-adpstyle1.a2m 6.8275e+001.8654e+01 1abwA a.1.1.2
1abwA/YGL228W-1abwA-simplesw-adpstyle5.a2m 6.8275e+001.8654e+01 1abwA a.1.1.2
1abwA/YGL228W-1abwA-global-str-0.3-adpstyle5.a2m 6.8275e+001.8846e+01 1abwA a.1.1.2
1flcB/YGL228W-1flcB-local-str-0.3-adpstyle5.a2m 2.8217e+011.9570e+01 1flcB h.3.1.1
1l0lC/YGL228W-1l0lC-global-adpstyle1.a2m 2.5808e+011.9891e+01 f.32.1.1
f.21.1.2
1l0lC/YGL228W-1l0lC-global-adpstyle5.a2m 2.5808e+011.9891e+01 f.32.1.1
f.21.1.2
1flcB/YGL228W-1flcB-local-str2-0.3-adpstyle5.a2m 2.8217e+011.9955e+01 1flcB h.3.1.1
1flcB/YGL228W-1flcB-global-dssp-ebghstl-0.3-adpstyle5.a2m 2.8217e+012.0848e+01 1flcB h.3.1.1
1abwA/YGL228W-1abwA-global-str2-0.3-adpstyle5.a2m 6.8275e+002.1119e+01 1abwA a.1.1.2
1abwA/YGL228W-1abwA-global-adpstyle5.a2m 6.8275e+002.1326e+01 1abwA a.1.1.2
1abwA/YGL228W-1abwA-global-adpstyle1.a2m 6.8275e+002.1326e+01 1abwA a.1.1.2
1abwA/YGL228W-1abwA-global-dssp-ebghstl-0.3-adpstyle5.a2m 6.8275e+002.1897e+01 1abwA a.1.1.2
1abwA/YGL228W-1abwA-global-stride-ebghtl-0.3-adpstyle5.a2m 6.8275e+002.2028e+01 1abwA a.1.1.2
1flcB/YGL228W-1flcB-global-alpha-0.3-adpstyle5.a2m 2.8217e+012.2132e+01 1flcB h.3.1.1
1l0lC/YGL228W-1l0lC-local-adpstyle1.a2m 2.5808e+012.2320e+01 f.32.1.1
f.21.1.2
1l0lC/YGL228W-1l0lC-local-adpstyle5.a2m 2.5808e+012.2320e+01 f.32.1.1
f.21.1.2
1fqvB/YGL228W-1fqvB-global-adpstyle5.a2m 3.6385e+012.2510e+01 1fqvD d.42.1.1
a.157.1.1
1fqvB/YGL228W-1fqvB-global-adpstyle1.a2m 3.6385e+012.2510e+01 1fqvD d.42.1.1
a.157.1.1
1flcB/YGL228W-1flcB-local-adpstyle1.a2m 2.8217e+012.2803e+01 1flcB h.3.1.1
1flcB/YGL228W-1flcB-local-adpstyle5.a2m 2.8217e+012.2803e+01 1flcB h.3.1.1
1flcB/YGL228W-1flcB-global-adpstyle1.a2m 2.8217e+012.5777e+01 1flcB h.3.1.1
1flcB/YGL228W-1flcB-global-adpstyle5.a2m 2.8217e+012.5777e+01 1flcB h.3.1.1
1nexA/YGL228W-1nexA-global-adpstyle1.a2m 1.9806e+012.5815e+01 d.42.1.1
a.157.1.1
1nexA/YGL228W-1nexA-global-adpstyle5.a2m 1.9806e+012.5815e+01 d.42.1.1
a.157.1.1
1flcB/YGL228W-1flcB-local-dssp-ebghstl-0.3-adpstyle5.a2m 2.8217e+012.5855e+01 1flcB h.3.1.1
1g0vA/YGL228W-1g0vA-local-adpstyle1.a2m 3.0538e+012.6554e+01 1smrA b.50.1.2
1g0vA/YGL228W-1g0vA-local-adpstyle5.a2m 3.0538e+012.6554e+01 1smrA b.50.1.2
1flcB/YGL228W-1flcB-local-stride-ebghtl-0.3-adpstyle5.a2m 2.8217e+012.7672e+01 1flcB h.3.1.1
1nexA/YGL228W-1nexA-simplesw-adpstyle1.a2m 1.9806e+013.0181e+01 d.42.1.1
a.157.1.1
1nexA/YGL228W-1nexA-simplesw-adpstyle5.a2m 1.9806e+013.0181e+01 d.42.1.1
a.157.1.1
2jxrA/YGL228W-2jxrA-local-adpstyle5.a2m 3.4450e+013.1031e+01 1smrA b.50.1.2
2jxrA/YGL228W-2jxrA-local-adpstyle1.a2m 3.4450e+013.1031e+01 1smrA b.50.1.2
1lo0L/YGL228W-1lo0L-simplesw-adpstyle1.a2m 2.1970e+013.1048e+01 b.1.1.2
b.1.1.1
1lo0L/YGL228W-1lo0L-simplesw-adpstyle5.a2m 2.1970e+013.1048e+01 b.1.1.2
b.1.1.1
1qoxA/YGL228W-1qoxA-local-adpstyle1.a2m 3.5918e+013.2524e+01 c.1.8.4
1qoxA/YGL228W-1qoxA-local-adpstyle5.a2m 3.5918e+013.2524e+01 c.1.8.4
1fqvB/YGL228W-1fqvB-local-adpstyle5.a2m 3.6385e+013.2986e+01 1fqvD d.42.1.1
a.157.1.1
1fqvB/YGL228W-1fqvB-local-adpstyle1.a2m 3.6385e+013.2986e+01 1fqvD d.42.1.1
a.157.1.1
1flcB/YGL228W-1flcB-local-str2-1.5-adpstyle5.a2m 2.8217e+013.4956e+01 1flcB h.3.1.1
1fqvB/YGL228W-1fqvB-simplesw-adpstyle5.a2m 3.6385e+013.5633e+01 1fqvD d.42.1.1
a.157.1.1
1fqvB/YGL228W-1fqvB-simplesw-adpstyle1.a2m 3.6385e+013.5633e+01 1fqvD d.42.1.1
a.157.1.1
1flcB/YGL228W-1flcB-global-stride-ebghtl-0.3-adpstyle5.a2m 2.8217e+013.5866e+01 1flcB h.3.1.1
1g0vA/YGL228W-1g0vA-global-adpstyle5.a2m 3.0538e+014.2472e+01 1smrA b.50.1.2
1g0vA/YGL228W-1g0vA-global-adpstyle1.a2m 3.0538e+014.2472e+01 1smrA b.50.1.2
2jxrA/YGL228W-2jxrA-global-adpstyle5.a2m 3.4450e+014.6924e+01 1smrA b.50.1.2
2jxrA/YGL228W-2jxrA-global-adpstyle1.a2m 3.4450e+014.6924e+01 1smrA b.50.1.2
1iucA/YGL228W-1iucA-simplesw-adpstyle5.a2m 1.9506e+014.8016e+01
1iucA/YGL228W-1iucA-simplesw-adpstyle1.a2m 1.9506e+014.8016e+01
1flcB/YGL228W-1flcB-simplesw-adpstyle1.a2m 2.8217e+015.0052e+01 1flcB h.3.1.1
1flcB/YGL228W-1flcB-simplesw-adpstyle5.a2m 2.8217e+015.0052e+01 1flcB h.3.1.1
1flcB/1flcB-YGL228W-local-adpstyle5.a2m 2.8217e+015.2269e+01 1flcB h.3.1.1
1flcB/1flcB-YGL228W-local-adpstyle1.a2m 2.8217e+015.2269e+01 1flcB h.3.1.1
1iucA/YGL228W-1iucA-global-adpstyle5.a2m 1.9506e+015.3344e+01
1iucA/YGL228W-1iucA-global-adpstyle1.a2m 1.9506e+015.3344e+01
1l0lC/YGL228W-1l0lC-simplesw-adpstyle5.a2m 2.5808e+015.5234e+01 f.32.1.1
f.21.1.2
1l0lC/YGL228W-1l0lC-simplesw-adpstyle1.a2m 2.5808e+015.5234e+01 f.32.1.1
f.21.1.2
1qoxA/YGL228W-1qoxA-simplesw-adpstyle1.a2m 3.5918e+016.3818e+01 c.1.8.4
1qoxA/YGL228W-1qoxA-simplesw-adpstyle5.a2m 3.5918e+016.3818e+01 c.1.8.4
1g0vA/YGL228W-1g0vA-simplesw-adpstyle1.a2m 3.0538e+016.4614e+01 1smrA b.50.1.2
1g0vA/YGL228W-1g0vA-simplesw-adpstyle5.a2m 3.0538e+016.4614e+01 1smrA b.50.1.2
1flcB/1flcB-YGL228W-global-adpstyle5.a2m 2.8217e+017.1723e+01 1flcB h.3.1.1
1flcB/1flcB-YGL228W-global-adpstyle1.a2m 2.8217e+017.1723e+01 1flcB h.3.1.1
2jxrA/YGL228W-2jxrA-simplesw-adpstyle1.a2m 3.4450e+017.2926e+01 1smrA b.50.1.2
2jxrA/YGL228W-2jxrA-simplesw-adpstyle5.a2m 3.4450e+017.2926e+01 1smrA b.50.1.2
1qoxA/YGL228W-1qoxA-global-adpstyle5.a2m 3.5918e+018.8652e+01 c.1.8.4
1qoxA/YGL228W-1qoxA-global-adpstyle1.a2m 3.5918e+018.8652e+01 c.1.8.4

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001