# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h5rA 293 2.13e-01 c.68.1.6 65623 1abwA 283 3.29e-01 1abwA a.1.1.2 15288 a.1.1.2 15289 1mp4A 292 6.37e-01 c.68.1.6 79376 1gw5M 435 2.81e+00 b.2.7.1 70631 d.110.4.2 70632 1lvwA 295 3.13e+00 c.68.1.6 84723 1h4vB 421 4.63e+00 1adjA c.51.1.1 60624 d.104.1.1 60625 1jk0A 419 4.65e+00 a.25.1.2 63142 1p5zB 263 5.06e+00 c.37.1.1 87815 1colA 204 5.09e+00 1a87 f.1.1.1 43378 1hz4A 373 5.85e+00 a.118.8.2 65960 1t7pA 698 7.13e+00 1t7pA c.55.3.5 33712 e.8.1.1 43005 1adjA 421 7.19e+00 1adjA c.51.1.1 33188 d.104.1.1 40737 1ki1B 352 7.26e+00 a.87.1.1 72497 b.55.1.1 72498 1bg1A 722 7.99e+00 1bg1A a.47.1.1 17767 b.2.5.5 22461 d.93.1.1 40527 1qsaA 618 9.51e+00 1qsaA a.118.5.1 19182 d.2.1.6 36988 1kfiA 572 9.73e+00 c.84.1.1 68555 c.84.1.1 68556 c.84.1.1 68557 d.129.2.1 68558 1lkxA 697 1.00e+01 c.37.1.9 73981 1sly 618 1.15e+01 1qsaA a.118.5.1 19184 d.2.1.6 36990 1dpjA 329 1.24e+01 1smrA b.50.1.2 26828 1j1uA 306 1.30e+01 c.26.1.1 83980 1ab4 477 1.38e+01 1ab4 e.11.1.1 43251 1mhyB 395 1.45e+01 1mtyB a.25.1.2 16781 1oyjA 231 1.45e+01 a.45.1.1 87597 c.47.1.5 87598 1jqeA 292 1.47e+01 c.66.1.19 71789 1h0oA 390 1.55e+01 a.25.1.2 70845 1nt2B 258 1.66e+01 a.183.1.1 86150 1gqiA 708 1.72e+01 c.1.8.10 76279 d.92.2.2 76280 1qciA 262 1.79e+01 1qi7A d.165.1.1 42201 1lp4A 332 1.86e+01 d.144.1.7 74170 1orjA 130 1.87e+01 1m2rA 327 1.89e+01 d.144.1.7 84760 1lpuA 332 1.89e+01 d.144.1.7 74177 1a87 321 1.91e+01 1a87 f.1.1.1 43380 1m4jA 142 1.94e+01 d.109.1.2 78602 1bh9B 89 2.02e+01 1bh9B a.22.1.3 16485 1xsm 390 2.03e+01 1xsm a.25.1.2 16804 1d6aB 262 2.13e+01 1qi7A d.165.1.1 42198 1fi4A 416 2.19e+01 1fi4A d.14.1.5 59847 d.58.26.2 59848 1l8aA 886 2.37e+01 c.36.1.6 73678 c.36.1.10 73677 c.48.1.1 73679 1h6pA 203 2.38e+01 a.146.1.1 60690 1oheA 348 2.44e+01 c.45.1.1 87013 c.45.1.1 87014 1hc7A 477 2.54e+01 1hc7A c.51.1.1 60938 d.68.5.1 60940 d.104.1.1 60939 1pjr 724 2.57e+01 1pjr c.37.1.19 32391 c.37.1.19 32392 1dlc 584 2.59e+01 1ciy b.18.1.3 23719 b.77.2.1 27976 f.1.3.1 43391 1fewA 184 2.62e+01 1fewA a.7.4.1 16334 1fxoA 293 2.64e+01 1g0rA c.68.1.6 34524 1mmoD 512 2.75e+01 1mhyD a.25.1.2 16770 1afrA 345 2.80e+01 1afrA a.25.1.2 16805 1qoyA 318 2.83e+01 1qoyA h.4.4.1 45788 1vom 762 2.91e+01 1lvk b.34.3.1 24577 c.37.1.9 32174 1k4wA 252 2.95e+01 a.123.1.1 72068 1ldg 316 2.98e+01 1ceqA c.2.1.5 30165 d.162.1.1 42132 2cblA 305 3.02e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1irxA 523 3.04e+01 a.97.1.2 71378 c.26.1.1 71379 1b47A 304 3.07e+01 2cblA a.39.1.7 17381 a.48.1.1 17775 d.93.1.1 40529 1p80A 753 3.09e+01 1h6gA 256 3.17e+01 1h6gA a.24.9.1 60669 a.24.9.1 60670 1n7oA 721 3.28e+01 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 2wrpR 107 3.29e+01 1jhgA a.4.12.1 19010 1hstA 90 3.33e+01 1hstA a.4.5.13 16140 1div 149 3.36e+01 1div d.99.1.1 40692 d.100.1.1 40693 3csuA 310 3.40e+01 3csuA c.78.1.1 35094 c.78.1.1 35095 1nq7A 244 3.42e+01 1a9xA 1058 3.47e+01 a.92.1.1 18550 c.24.1.1 31479 c.30.1.1 31657 c.30.1.1 31658 d.142.1.2 41502 d.142.1.2 41503 1lxkA 721 3.47e+01 a.102.3.2 74331 b.24.1.1 74332 b.30.5.2 74333 2ki5A 366 3.49e+01 1qhiA c.37.1.1 31862 1at1A 310 3.62e+01 3csuA c.78.1.1 35168 c.78.1.1 35169 1g4yR 148 3.63e+01 1cll a.39.1.5 60252 1kpgA 287 3.67e+01 c.66.1.18 68735 1kimA 366 3.68e+01 1qhiA c.37.1.1 31864 1kp9B 287 3.72e+01 c.66.1.18 68734 1g0rA 293 3.73e+01 1g0rA c.68.1.6 34532 1qhiA 366 3.73e+01 1qhiA c.37.1.1 31860 1c3oA 1073 3.74e+01 1c3oA a.92.1.1 18562 c.24.1.1 31491 c.30.1.1 31681 c.30.1.1 31682 d.142.1.2 41526 d.142.1.2 41527 1eguA 731 3.85e+01 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1eh9A 558 3.85e+01 1ehaA b.1.18.2 21858 b.71.1.1 27785 c.1.8.1 28772 1ekxA 311 3.91e+01 3csuA c.78.1.1 35088 c.78.1.1 35089