# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1gw5M	435	8.20e-01		b.2.7.1	70631
				d.110.4.2	70632
1flcB	175	1.63e+00	1flcB	h.3.1.1	45716
1gh9A	71	4.08e+00	1gh9A	g.41.6.1	45266
1dxrL	273	4.86e+00	6prcL	f.26.1.1	43431
1mn4A	282	5.39e+00		b.2.5.7	79313
1hgxA	183	5.42e+00	1tc1A	c.61.1.1	34027
6prcL	273	6.62e+00	6prcL	f.26.1.1	43434
1ad3A	452	6.85e+00	1ad3A	c.82.1.1	35335
3rp2A	224	7.15e+00	1a7s	b.47.1.2	26298
1ofcX	304	7.37e+00			
1kyqA	274	7.81e+00		c.2.1.11	73281
				e.37.1.1	73282
1aijL	281	8.31e+00	6prcL	f.26.1.1	43461
1o7nB	194	9.06e+00		d.17.4.4	81164
1eg9B	194	9.06e+00	1ndoB	d.17.4.4	38120
1sva1	361	9.99e+00	1vpsA		
1ndoB	194	1.04e+01	1ndoB	d.17.4.4	38121
1h6gA	256	1.07e+01	1h6gA	a.24.9.1	60669
				a.24.9.1	60670
1or7A	194	1.18e+01		a.4.13.2	87332
				a.177.1.1	87333
1a36A	592	1.24e+01	1a36A	a.2.8.1	15715
				d.163.1.2	42173
				e.15.1.1	43266
1a31A	538	1.25e+01	1a36A	d.163.1.2	42170
				e.15.1.1	43263
1n3kA	130	1.28e+01		a.77.1.4	79965
1abwA	283	1.29e+01	1abwA	a.1.1.2	15288
				a.1.1.2	15289
1irxA	523	1.39e+01		a.97.1.2	71378
				c.26.1.1	71379
1cg2A	393	1.42e+01	1cg2A	c.56.5.4	33844
				d.58.19.1	39360
1jjoC	261	1.61e+01			
1c8oA	300	1.62e+01	1c8oA	e.1.1.1	42677
1dd5A	185	1.77e+01	1dd5A	d.67.3.1	39564
1hc7A	477	1.78e+01	1hc7A	c.51.1.1	60938
				d.68.5.1	60940
				d.104.1.1	60939
1nxiA	132	1.91e+01		d.58.47.1	86381
1d5rA	324	2.00e+01	1d5rA	b.7.1.1	23181
				c.45.1.1	32697
1m4jA	142	2.08e+01		d.109.1.2	78602
1f0cA	305	2.08e+01	1c8oA	e.1.1.1	42676
1hssA	124	2.22e+01	1bea	a.52.1.2	17819
1a0fA	201	2.53e+01	1a0fA	a.45.1.1	17737
				c.47.1.5	33031
1mnnA	340	2.53e+01		b.2.5.7	79324
1bgyE	196	2.67e+01	1bgyE	f.23.12.1	43683
1aroP	883	2.69e+01	1cezA	e.8.1.3	43112
1iioA	84	2.92e+01		a.39.4.1	66150
3cln	148	2.94e+01	1cll	a.39.1.5	17286
1lrzA	426	3.04e+01		a.2.7.4	78167
				d.108.1.4	78168
				d.108.1.4	78169
1gmeA	151	3.14e+01		b.15.1.1	65305
1txb	73	3.35e+01	1txb	g.7.1.1	44455
1a5t	334	3.46e+01	1a5t	a.80.1.1	18450
				c.37.1.20	32423
1nzeA	149	3.48e+01			
1khcA	147	3.61e+01		b.34.9.2	68608
1h4vB	421	3.65e+01	1adjA	c.51.1.1	60624
				d.104.1.1	60625
1ipiA	123	3.67e+01		c.52.1.18	66255
1q0sA	259	3.76e+01			
1cll	148	3.92e+01	1cll	a.39.1.5	17263