Best Alignments for YEL027W

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2bl2A/YEL027W-2bl2A-local-str2-1.5-adpstyle5.a2m 5.9677e-172.4255e-24
2bl2A/YEL027W-2bl2A-global-str2-1.5-adpstyle5.a2m 5.9677e-172.4941e-24
2bl2A/2bl2A-YEL027W-global-adpstyle1.a2m 5.9677e-179.8272e-23
2bl2A/2bl2A-YEL027W-global-adpstyle5.a2m 5.9677e-179.8272e-23
2bl2A/YEL027W-2bl2A-global-dssp-ebghstl-0.3-adpstyle5.a2m 5.9677e-171.0587e-22
2bl2A/YEL027W-2bl2A-global-str2-0.3-adpstyle5.a2m 5.9677e-171.6302e-22
2bl2A/YEL027W-2bl2A-global-stride-ebghtl-0.3-adpstyle5.a2m 5.9677e-173.2080e-22
2bl2A/YEL027W-2bl2A-global-alpha-0.3-adpstyle5.a2m 5.9677e-174.5289e-22
2bl2A/YEL027W-2bl2A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 5.9677e-177.7533e-22
2bl2A/YEL027W-2bl2A-local-dssp-ebghstl-0.3-adpstyle5.a2m 5.9677e-171.1672e-21
2bl2A/YEL027W-2bl2A-local-str2-0.3-adpstyle5.a2m 5.9677e-171.6324e-21
2bl2A/YEL027W-2bl2A-local-stride-ebghtl-0.3-adpstyle5.a2m 5.9677e-171.7208e-21
2bl2A/2bl2A-YEL027W-local-adpstyle5.a2m 5.9677e-171.8317e-21
2bl2A/2bl2A-YEL027W-local-adpstyle1.a2m 5.9677e-171.8317e-21
2bl2A/YEL027W-2bl2A-local-alpha-0.3-adpstyle5.a2m 5.9677e-172.2357e-21
2bl2A/YEL027W-2bl2A-global-adpstyle5.a2m 5.9677e-174.1219e-21
2bl2A/YEL027W-2bl2A-global-adpstyle1.a2m 5.9677e-174.1219e-21
2bl2A/YEL027W-2bl2A-local-adpstyle5.a2m 5.9677e-173.9849e-20
2bl2A/YEL027W-2bl2A-local-adpstyle1.a2m 5.9677e-173.9849e-20
2bl2A/YEL027W-2bl2A-simplesw-adpstyle1.a2m 5.9677e-177.5921e-16
2bl2A/YEL027W-2bl2A-simplesw-adpstyle5.a2m 5.9677e-177.5921e-16
1yceA/1yceA-YEL027W-local-adpstyle1.a2m 6.8431e-073.2532e-08
1yceA/1yceA-YEL027W-local-adpstyle5.a2m 6.8431e-073.2532e-08
1yceA/YEL027W-1yceA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 6.8431e-074.9990e-08
1yceA/1yceA-YEL027W-global-adpstyle1.a2m 6.8431e-077.2701e-08
1yceA/1yceA-YEL027W-global-adpstyle5.a2m 6.8431e-077.2701e-08
1yceA/YEL027W-1yceA-global-dssp-ebghstl-0.3-adpstyle5.a2m 6.8431e-077.6350e-08
1yceA/YEL027W-1yceA-local-dssp-ebghstl-0.3-adpstyle5.a2m 6.8431e-077.9162e-08
1yceA/YEL027W-1yceA-global-alpha-0.3-adpstyle5.a2m 6.8431e-079.0983e-08
1yceA/YEL027W-1yceA-global-stride-ebghtl-0.3-adpstyle5.a2m 6.8431e-079.4043e-08
1yceA/YEL027W-1yceA-local-stride-ebghtl-0.3-adpstyle5.a2m 6.8431e-079.7200e-08
1yceA/YEL027W-1yceA-local-alpha-0.3-adpstyle5.a2m 6.8431e-071.0048e-07
1yceA/YEL027W-1yceA-local-str2-1.5-adpstyle5.a2m 6.8431e-071.0148e-07
1yceA/YEL027W-1yceA-local-str2-0.3-adpstyle5.a2m 6.8431e-071.0452e-07
1yceA/YEL027W-1yceA-global-str2-0.3-adpstyle5.a2m 6.8431e-071.2099e-07
1yceA/YEL027W-1yceA-global-adpstyle1.a2m 6.8431e-071.2618e-07
1yceA/YEL027W-1yceA-global-adpstyle5.a2m 6.8431e-071.2618e-07
1yceA/YEL027W-1yceA-local-adpstyle1.a2m 6.8431e-071.7463e-07
1yceA/YEL027W-1yceA-local-adpstyle5.a2m 6.8431e-071.7463e-07
1yceA/YEL027W-1yceA-global-str2-1.5-adpstyle5.a2m 6.8431e-072.6169e-07
1a91/YEL027W-1a91-global-str2-0.3-adpstyle5.a2m 9.7092e-065.8881e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-global-str-0.3-adpstyle5.a2m 9.7092e-066.4849e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-global-dssp-ebghstl-0.3-adpstyle5.a2m 9.7092e-066.9356e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-local-str2-0.3-adpstyle5.a2m 9.7092e-067.3180e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-global-alpha-0.3-adpstyle5.a2m 9.7092e-067.3915e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-global-stride-ebghtl-0.3-adpstyle5.a2m 9.7092e-067.5809e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-local-str-0.3-adpstyle5.a2m 9.7092e-067.8099e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-local-dssp-ebghstl-0.3-adpstyle5.a2m 9.7092e-068.4335e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-local-stride-ebghtl-0.3-adpstyle5.a2m 9.7092e-068.7993e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-local-str2-1.5-adpstyle5.a2m 9.7092e-069.1361e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-local-alpha-0.3-adpstyle5.a2m 9.7092e-069.7733e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-global-adpstyle1.a2m 9.7092e-069.9283e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-global-adpstyle5.a2m 9.7092e-069.9283e-07 1a91 f.17.1.1
1a91/YEL027W-1a91-global-str2-1.5-adpstyle5.a2m 9.7092e-061.1427e-06 1a91 f.17.1.1
1a91/YEL027W-1a91-local-adpstyle5.a2m 9.7092e-062.0601e-06 1a91 f.17.1.1
1a91/YEL027W-1a91-local-adpstyle1.a2m 9.7092e-062.0601e-06 1a91 f.17.1.1
1a91/YEL027W-1a91-local-str-1.5-adpstyle5.a2m 9.7092e-062.3415e-06 1a91 f.17.1.1
1a91/YEL027W-1a91-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 9.7092e-062.7079e-06 1a91 f.17.1.1
1a91/1a91-YEL027W-local-adpstyle5.a2m 9.7092e-062.7979e-06 1a91 f.17.1.1
1a91/1a91-YEL027W-local-adpstyle1.a2m 9.7092e-062.7979e-06 1a91 f.17.1.1
1a91/YEL027W-1a91-global-str-1.5-adpstyle5.a2m 9.7092e-063.1106e-06 1a91 f.17.1.1
1ijpA/YEL027W-1ijpA-global-adpstyle1.a2m 2.7469e-053.1393e-06 f.17.1.1
1ijpA/YEL027W-1ijpA-global-adpstyle5.a2m 2.7469e-053.1393e-06 f.17.1.1
1a91/1a91-YEL027W-global-adpstyle5.a2m 9.7092e-064.9427e-06 1a91 f.17.1.1
1a91/1a91-YEL027W-global-adpstyle1.a2m 9.7092e-064.9427e-06 1a91 f.17.1.1
1ijpA/YEL027W-1ijpA-local-adpstyle5.a2m 2.7469e-056.2220e-06 f.17.1.1
1ijpA/YEL027W-1ijpA-local-adpstyle1.a2m 2.7469e-056.2220e-06 f.17.1.1
1yceA/YEL027W-1yceA-simplesw-adpstyle5.a2m 6.8431e-071.0309e-05
1yceA/YEL027W-1yceA-simplesw-adpstyle1.a2m 6.8431e-071.0309e-05
1l6tA/YEL027W-1l6tA-global-adpstyle5.a2m 8.1181e-051.3632e-05 f.17.1.1
1l6tA/YEL027W-1l6tA-global-adpstyle1.a2m 8.1181e-051.3632e-05 f.17.1.1
1l6tA/YEL027W-1l6tA-local-adpstyle1.a2m 8.1181e-052.1819e-05 f.17.1.1
1l6tA/YEL027W-1l6tA-local-adpstyle5.a2m 8.1181e-052.1819e-05 f.17.1.1
1a91/1a91-YEL027W-fssp-local-adpstyle5.a2m 9.7092e-063.3653e-05 1a91 f.17.1.1
1a91/1a91-YEL027W-fssp-global-adpstyle5.a2m 9.7092e-063.7888e-05 1a91 f.17.1.1
1a91/YEL027W-1a91-simplesw-adpstyle1.a2m 9.7092e-065.9456e-05 1a91 f.17.1.1
1a91/YEL027W-1a91-simplesw-adpstyle5.a2m 9.7092e-065.9456e-05 1a91 f.17.1.1
1ijpA/YEL027W-1ijpA-simplesw-adpstyle5.a2m 2.7469e-051.3613e-04 f.17.1.1
1ijpA/YEL027W-1ijpA-simplesw-adpstyle1.a2m 2.7469e-051.3613e-04 f.17.1.1
1l6tA/YEL027W-1l6tA-simplesw-adpstyle5.a2m 8.1181e-054.0809e-04 f.17.1.1
1l6tA/YEL027W-1l6tA-simplesw-adpstyle1.a2m 8.1181e-054.0809e-04 f.17.1.1
1aty/YEL027W-1aty-global-adpstyle1.a2m 5.6185e+006.4616e-02 1aty j.35.1.1
1aty/YEL027W-1aty-global-adpstyle5.a2m 5.6185e+006.4616e-02 1aty j.35.1.1
1aty/YEL027W-1aty-global-str-0.3-adpstyle5.a2m 5.6185e+001.0726e-01 1aty j.35.1.1
1aty/YEL027W-1aty-local-adpstyle5.a2m 5.6185e+001.3620e-01 1aty j.35.1.1
1aty/YEL027W-1aty-local-adpstyle1.a2m 5.6185e+001.3620e-01 1aty j.35.1.1
1aty/YEL027W-1aty-global-dssp-ebghstl-0.3-adpstyle5.a2m 5.6185e+001.3698e-01 1aty j.35.1.1
1aty/YEL027W-1aty-global-str2-0.3-adpstyle5.a2m 5.6185e+001.5079e-01 1aty j.35.1.1
1aty/YEL027W-1aty-global-stride-ebghtl-0.3-adpstyle5.a2m 5.6185e+001.5208e-01 1aty j.35.1.1
1aty/YEL027W-1aty-local-dssp-ebghstl-0.3-adpstyle5.a2m 5.6185e+001.7747e-01 1aty j.35.1.1
1aty/YEL027W-1aty-local-str-0.3-adpstyle5.a2m 5.6185e+001.8721e-01 1aty j.35.1.1
1aty/YEL027W-1aty-local-str2-0.3-adpstyle5.a2m 5.6185e+002.2817e-01 1aty j.35.1.1
1aty/YEL027W-1aty-global-alpha-0.3-adpstyle5.a2m 5.6185e+002.9512e-01 1aty j.35.1.1
1aty/YEL027W-1aty-global-str-1.5-adpstyle5.a2m 5.6185e+003.7466e-01 1aty j.35.1.1
1aty/YEL027W-1aty-local-stride-ebghtl-0.3-adpstyle5.a2m 5.6185e+003.9621e-01 1aty j.35.1.1
1aty/YEL027W-1aty-global-str2-1.5-adpstyle5.a2m 5.6185e+004.5945e-01 1aty j.35.1.1
1dzbA/32c2A-YEL027W-fssp-local-adpstyle5.a2m 9.9093e-015.8938e-01 32c2A b.1.1.1
1dzbA/32c2A-YEL027W-fssp-global-adpstyle5.a2m 9.9093e-015.8993e-01 32c2A b.1.1.1
1aty/YEL027W-1aty-local-str-1.5-adpstyle5.a2m 5.6185e+006.0068e-01 1aty j.35.1.1
1aty/YEL027W-1aty-local-alpha-0.3-adpstyle5.a2m 5.6185e+006.6322e-01 1aty j.35.1.1
1aty/YEL027W-1aty-local-str2-1.5-adpstyle5.a2m 5.6185e+006.6751e-01 1aty j.35.1.1
1dzbA/YEL027W-1dzbA-global-adpstyle5.a2m 9.9093e-017.1169e-01 32c2A b.1.1.1
1dzbA/YEL027W-1dzbA-global-adpstyle1.a2m 9.9093e-017.1169e-01 32c2A b.1.1.1
1aty/YEL027W-1aty-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 5.6185e+007.1368e-01 1aty j.35.1.1
1dzbA/YEL027W-1dzbA-local-adpstyle1.a2m 9.9093e-018.8475e-01 32c2A b.1.1.1
1dzbA/YEL027W-1dzbA-local-adpstyle5.a2m 9.9093e-018.8475e-01 32c2A b.1.1.1
1qokA/1f3rB-YEL027W-fssp-local-adpstyle5.a2m 2.5057e+001.0741e+00 1f3rB b.1.1.1
1qokA/1f3rB-YEL027W-fssp-global-adpstyle5.a2m 2.5057e+001.1765e+00 1f3rB b.1.1.1
1aty/1aty-YEL027W-fssp-local-adpstyle5.a2m 5.6185e+002.2988e+00 1aty j.35.1.1
1qokA/YEL027W-1qokA-local-adpstyle5.a2m 2.5057e+002.4153e+00 1f3rB b.1.1.1
1qokA/YEL027W-1qokA-local-adpstyle1.a2m 2.5057e+002.4153e+00 1f3rB b.1.1.1
1aty/1aty-YEL027W-fssp-global-adpstyle5.a2m 5.6185e+002.4430e+00 1aty j.35.1.1
1dzbA/YEL027W-1dzbA-simplesw-adpstyle1.a2m 9.9093e-012.8846e+00 32c2A b.1.1.1
1dzbA/YEL027W-1dzbA-simplesw-adpstyle5.a2m 9.9093e-012.8846e+00 32c2A b.1.1.1
1aty/YEL027W-1aty-simplesw-adpstyle1.a2m 5.6185e+003.7979e+00 1aty j.35.1.1
1aty/YEL027W-1aty-simplesw-adpstyle5.a2m 5.6185e+003.7979e+00 1aty j.35.1.1
1qokA/YEL027W-1qokA-simplesw-adpstyle1.a2m 2.5057e+005.5690e+00 1f3rB b.1.1.1
1qokA/YEL027W-1qokA-simplesw-adpstyle5.a2m 2.5057e+005.5690e+00 1f3rB b.1.1.1
1qokA/YEL027W-1qokA-global-adpstyle5.a2m 2.5057e+006.4821e+00 1f3rB b.1.1.1
1qokA/YEL027W-1qokA-global-adpstyle1.a2m 2.5057e+006.4821e+00 1f3rB b.1.1.1
1y11A/YEL027W-1y11A-global-adpstyle1.a2m 1.2713e+019.7456e+00
1y11A/YEL027W-1y11A-global-adpstyle5.a2m 1.2713e+019.7456e+00
1ry4A/YEL027W-1ry4A-global-adpstyle1.a2m 1.1479e+011.0879e+01 b.36.1.1
1ry4A/YEL027W-1ry4A-global-adpstyle5.a2m 1.1479e+011.0879e+01 b.36.1.1
1rzxA/YEL027W-1rzxA-local-adpstyle5.a2m 1.0600e+011.2087e+01 b.36.1.1
1rzxA/YEL027W-1rzxA-local-adpstyle1.a2m 1.0600e+011.2087e+01 b.36.1.1
1x8sA/YEL027W-1x8sA-local-adpstyle5.a2m 1.0758e+011.2280e+01
1x8sA/YEL027W-1x8sA-local-adpstyle1.a2m 1.0758e+011.2280e+01
1ry4A/YEL027W-1ry4A-local-adpstyle5.a2m 1.1479e+011.3155e+01 b.36.1.1
1ry4A/YEL027W-1ry4A-local-adpstyle1.a2m 1.1479e+011.3155e+01 b.36.1.1
1rzxA/YEL027W-1rzxA-global-adpstyle1.a2m 1.0600e+011.3690e+01 b.36.1.1
1rzxA/YEL027W-1rzxA-global-adpstyle5.a2m 1.0600e+011.3690e+01 b.36.1.1
1y11A/YEL027W-1y11A-local-adpstyle1.a2m 1.2713e+011.4652e+01
1y11A/YEL027W-1y11A-local-adpstyle5.a2m 1.2713e+011.4652e+01
1aty/1aty-YEL027W-local-adpstyle5.a2m 5.6185e+001.5606e+01 1aty j.35.1.1
1aty/1aty-YEL027W-local-adpstyle1.a2m 5.6185e+001.5606e+01 1aty j.35.1.1
1aty/1aty-YEL027W-global-adpstyle1.a2m 5.6185e+001.5763e+01 1aty j.35.1.1
1aty/1aty-YEL027W-global-adpstyle5.a2m 5.6185e+001.5763e+01 1aty j.35.1.1
1x8sA/YEL027W-1x8sA-global-adpstyle1.a2m 1.0758e+011.6615e+01
1x8sA/YEL027W-1x8sA-global-adpstyle5.a2m 1.0758e+011.6615e+01
1rzxA/YEL027W-1rzxA-simplesw-adpstyle5.a2m 1.0600e+012.4251e+01 b.36.1.1
1rzxA/YEL027W-1rzxA-simplesw-adpstyle1.a2m 1.0600e+012.4251e+01 b.36.1.1
1x8sA/YEL027W-1x8sA-simplesw-adpstyle1.a2m 1.0758e+012.4605e+01
1x8sA/YEL027W-1x8sA-simplesw-adpstyle5.a2m 1.0758e+012.4605e+01
1ry4A/YEL027W-1ry4A-simplesw-adpstyle1.a2m 1.1479e+012.6754e+01 b.36.1.1
1ry4A/YEL027W-1ry4A-simplesw-adpstyle5.a2m 1.1479e+012.6754e+01 b.36.1.1
1y11A/YEL027W-1y11A-simplesw-adpstyle1.a2m 1.2713e+012.7239e+01
1y11A/YEL027W-1y11A-simplesw-adpstyle5.a2m 1.2713e+012.7239e+01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001