# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1r8mE	203	6.16e-57			
1r8sE	203	3.41e-56			
1ku1A	230	5.06e-56		a.118.3.1	72996
1pbv	195	2.65e-55	1pbv	a.118.3.1	19179
1xszA	356	5.16e-42			
1nw8A	319	2.35e-01		c.66.1.11	86292
1eg2A	319	2.59e-01	1eg2A	c.66.1.11	34249
1es9A	232	8.78e-01	1wab	c.23.10.3	31340
1ibrB	462	1.28e+00	1qgrA	a.118.1.1	19120
1xg9A	260	1.31e+00			
1qgrA	876	1.31e+00	1qgrA	a.118.1.1	19119
1jplA	171	1.45e+00		a.118.9.2	67027
1wab	232	1.72e+00	1wab	c.23.10.3	31341
1ad3A	452	1.89e+00	1ad3A	c.82.1.1	35335
1qbkB	890	2.24e+00	1qbkB	a.118.1.1	19127
1fyhA	258	2.24e+00	1d9cA	a.26.1.3	16907
				a.26.1.3	16908
1gw5A	621	3.82e+00		a.118.1.10	70629
1nfiA	301	3.96e+00	1a3qA	b.1.18.1	21942
				b.2.5.3	22455
1gw5B	591	4.48e+00		a.118.1.10	70630
1lt8A	406	4.54e+00		c.1.26.1	78186
1nc5A	373	5.68e+00		a.102.1.6	85548
1bt3A	345	5.99e+00	1bt3A	a.86.1.2	18507
1oj6A	151	6.07e+00			
1w36C	1122	6.35e+00			
1nfiC	301	7.14e+00		b.1.18.1	21943
				b.2.5.3	22456
1korA	400	7.80e+00		c.26.2.1	72824
				d.210.1.1	72825
1mhqA	148	9.12e+00		a.118.9.2	84973
1owcA	427	9.19e+00			
1i1qA	520	9.20e+00	1qdlA	d.161.1.1	61543
1rkpA	326	9.66e+00			
1q1fA	151	1.07e+01			
1np3A	338	1.11e+01		a.100.1.2	85946
				c.2.1.6	85947
1gpjA	404	1.19e+01		a.151.1.1	65451
				c.2.1.7	65452
				d.58.39.1	65453
2dpmA	284	1.20e+01	2dpmA	c.66.1.28	34246
1tiqA	180	1.38e+01			
1jrrA	382	1.45e+01		e.1.1.1	63256
1a0cA	438	1.48e+01	1a0cA	c.1.15.3	29529
1k3pA	426	1.51e+01		a.103.1.1	77237
1xqoA	256	1.56e+01			
1jx2B	315	1.82e+01		c.37.1.8	67404
1vzoA	355	2.04e+01			
1fgyA	127	2.04e+01	1faoA	b.55.1.1	26976
1eqnA	321	2.12e+01	1dd9A	e.13.1.1	43256
1v9mA	323	2.34e+01			
1ekbB	235	2.36e+01	5ptp	b.47.1.2	26282
1h38D	883	2.37e+01		e.8.1.3	76628
1dd9A	338	2.46e+01	1dd9A	e.13.1.1	43254
1ddeA	338	2.53e+01	1dd9A	e.13.1.1	43255
1jwyB	315	2.70e+01		c.37.1.8	67401
1vorS	100	2.91e+01			
1upkA	341	2.93e+01			
1rw2A	152	2.96e+01			
1vhyA	257	2.98e+01			
1r5zA	323	3.01e+01			
1fps	348	3.07e+01	1uby	a.128.1.1	19436
1ku2A	241	3.24e+01		a.4.13.1	83096
				a.177.1.1	83097
1h38B	883	3.38e+01		e.8.1.3	76626
1q52A	314	3.61e+01			
1onrA	316	3.62e+01	1onrA	c.1.10.1	29169
1dl2A	511	3.65e+01	1dl2A	a.102.2.1	18844
1jeqA	609	3.66e+01	1jeqA	a.140.2.1	64748
				e.31.1.1	64749
1xpcA	248	3.71e+01			
1efuB	282	3.92e+01	1efuB	a.5.2.2	58975
				d.43.1.1	58976
				d.43.1.1	38677
1r6uA	437	3.94e+01