# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1i7dA	659	1.66e-01	1d6mA	e.10.1.1	61886
1eur	365	9.41e-01	1eut	b.68.1.1	27607
1d6mA	653	1.73e+00	1d6mA	e.10.1.1	43248
1e7uA	961	3.29e+00	1e8xA	a.118.1.6	19147
				b.7.1.1	23182
				d.15.1.5	37630
				d.144.1.4	41710
1c8oA	300	3.50e+00	1c8oA	e.1.1.1	42677
1ky9A	448	4.59e+00			
1qhdA	398	4.71e+00	1qhdA	a.115.1.2	63324
				b.19.1.1	63325
1qfxA	460	5.21e+00	1qfxA	c.60.1.3	33994
1eut	605	5.32e+00	1eut	b.1.1.5	21891
				b.18.1.1	23712
				b.68.1.1	27609
1hlcA	129	5.69e+00	1c1lA	b.29.1.3	24208
1euu	605	5.71e+00	1eut	b.1.1.5	21892
				b.18.1.1	23713
				b.68.1.1	27610
1ky9B	448	6.95e+00			
4htcI	65	7.23e+00	4htcI	g.3.15.2	44368
1lxdA	100	9.37e+00	1lfdA	d.15.1.5	37624
1h70A	255	9.41e+00	1h70A	d.126.1.3	60711
1e8yA	966	1.10e+01	1e8xA	a.118.1.6	19152
				b.7.1.1	23187
				d.15.1.5	37635
				d.144.1.4	41715
1bvqA	141	1.25e+01	1bvqA	d.38.1.1	38542
1lo7A	141	1.55e+01			
830cA	168	1.70e+01	1ck7A	d.92.1.11	40400
2bpa2	175	1.71e+01	2bpa2		
1h4wA	224	1.87e+01		b.47.1.2	65622
1k5jA	124	1.96e+01		b.13.3.1	68201
1ixmB	192	2.01e+01	1ixmA	d.123.1.1	41115
2bc2A	227	2.04e+01	1a7tA	d.157.1.1	42031
1f0cA	305	2.05e+01	1c8oA	e.1.1.1	42676
1k24A	253	2.09e+01			
1fhoA	119	2.15e+01	1fhoA	b.55.1.1	26982
1cxvA	164	2.41e+01	1ck7A	d.92.1.11	40404
2bc2B	227	2.43e+01	1a7tA	d.157.1.1	42032
1dpo	223	2.43e+01	5ptp	b.47.1.2	25975
1al0G	175	2.70e+01	2bpa2	b.10.1.1	23275
3mddA	385	2.73e+01	3mdeA	a.29.3.1	16592
				e.6.1.1	42853
3mdeA	385	2.75e+01	3mdeA	a.29.3.1	16594
				e.6.1.1	42855
1tiu	98	2.85e+01	1tit	b.1.1.4	21715
1xdtR	79	3.01e+01	1xdtR	g.3.11.1	44296
1eybA	471	3.09e+01	1ey2A	b.82.1.4	28115
1hg8A	349	3.22e+01		b.80.1.3	65830
1ey2A	471	3.34e+01	1ey2A	b.82.1.4	28116
1e8xA	961	3.37e+01	1e8xA	a.118.1.6	19148
				b.7.1.1	23183
				d.15.1.5	37631
				d.144.1.4	41711
1a8p	258	3.38e+01	1fdr	b.43.4.2	25654
				c.25.1.1	31544
4bcl	366	3.38e+01	4bcl	b.75.1.1	27968
1g2iA	166	3.57e+01	1g2iA	c.23.16.2	31438
1egdA	396	3.76e+01	3mdeA	a.29.3.1	16596
				e.6.1.1	42857
1bwyA	132	3.80e+01	1hmt	b.60.1.2	27172
1fmb	104	3.94e+01	1fmb	b.50.1.1	26777