# List of top-scoring protein chains for t2k-100-30-str hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1i7dA	659	4.55e-01	1d6mA	e.10.1.1	61886
1d6mA	653	1.30e+00	1d6mA	e.10.1.1	43248
1hlcA	129	2.42e+00	1c1lA	b.29.1.3	24208
1eur	365	3.66e+00	1eut	b.68.1.1	27607
1ey2A	471	3.84e+00	1ey2A	b.82.1.4	28116
830cA	168	4.20e+00	1ck7A	d.92.1.11	40400
1cxvA	164	4.94e+00	1ck7A	d.92.1.11	40404
1eybA	471	5.75e+00	1ey2A	b.82.1.4	28115
1c8oA	300	7.12e+00	1c8oA	e.1.1.1	42677
1dtoA	221	7.90e+00	1dtoA	b.91.1.1	28405
1ovaA	386	8.11e+00	1ovaA	e.1.1.1	42619
1h6fA	193	9.64e+00			
1qfxA	460	1.04e+01	1qfxA	c.60.1.3	33994
1idaA	99	1.40e+01	1fmb	b.50.1.1	26715
1k9vF	201	1.43e+01		c.23.16.1	68365
1ha1	184	1.51e+01	1ha1	d.58.7.1	39147
				d.58.7.1	39148
1gpwB	201	1.59e+01		c.23.16.1	65461
1d7pM	159	1.61e+01	1cztA	b.18.1.2	23718
1hleA	345	1.66e+01	1ovaA	e.1.1.1	42618
4htcI	65	1.68e+01	4htcI	g.3.15.2	44368
1l3kA	196	1.72e+01			
1qlpA	394	1.73e+01	1ovaA	e.1.1.1	42628
1k0eA	453	1.86e+01		d.161.1.1	67938
9apiA	347	1.93e+01	1ovaA	e.1.1.1	42630
1h70A	255	2.15e+01	1h70A	d.126.1.3	60711
1k92A	455	2.20e+01		c.26.2.1	68325
				d.210.1.1	68326
1bet	107	2.29e+01	1bndA	g.17.1.3	44801
1d0dA	60	2.30e+01	1kigI	g.8.1.2	44566
1sek	378	2.35e+01	1sek	e.1.1.1	42675
1dcjA	81	2.47e+01	1dcjA	d.68.3.1	59115
1dst	228	2.54e+01	1a7s	b.47.1.2	26318
1lo7A	141	2.57e+01			
1aocA	175	2.58e+01	1aocA	g.17.1.5	44817
1eut	605	2.61e+01	1eut	b.1.1.5	21891
				b.18.1.1	23712
				b.68.1.1	27609
1jrrA	382	2.82e+01		e.1.1.1	63256
1f0cA	305	2.90e+01	1c8oA	e.1.1.1	42676
1qhdA	398	2.99e+01	1qhdA	a.115.1.2	63324
				b.19.1.1	63325
1ky9B	448	3.00e+01			
1euu	605	3.13e+01	1eut	b.1.1.5	21892
				b.18.1.1	23713
				b.68.1.1	27610
1dd5A	185	3.21e+01	1dd5A	d.67.3.1	39564
1ixmB	192	3.31e+01	1ixmA	d.123.1.1	41115
1jevA	517	3.34e+01	1jevA	c.94.1.1	35720
2olbA	517	3.36e+01	1jevA	c.94.1.1	35721
1bxxA	285	3.50e+01	1bw8A	b.2.7.1	22483
1l9mA	692	3.60e+01			
2bpa2	175	3.65e+01	2bpa2		
1lci	550	3.73e+01	1lci	e.23.1.1	43349
1pcfA	66	3.75e+01	1pcfA	d.18.1.1	38142
1fhoA	119	3.78e+01	1fhoA	b.55.1.1	26982
1h4wA	224	3.78e+01		b.47.1.2	65622
1jetA	517	3.91e+01	1jevA	c.94.1.1	35718
1bwyA	132	3.99e+01	1hmt	b.60.1.2	27172