# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1c8oA	300	1.80e+00	1c8oA	e.1.1.1	42677
1eur	365	2.15e+00	1eut	b.68.1.1	27607
1f0cA	305	2.35e+00	1c8oA	e.1.1.1	42676
1hlcA	129	2.77e+00	1c1lA	b.29.1.3	24208
1d6mA	653	3.99e+00	1d6mA	e.10.1.1	43248
830cA	168	4.27e+00	1ck7A	d.92.1.11	40400
1i7dA	659	4.40e+00	1d6mA	e.10.1.1	61886
1ky9B	448	4.47e+00			
1cxvA	164	5.04e+00	1ck7A	d.92.1.11	40404
1ky9A	448	6.88e+00			
4htcI	65	7.04e+00	4htcI	g.3.15.2	44368
1qhdA	398	7.20e+00	1qhdA	a.115.1.2	63324
				b.19.1.1	63325
2bc2B	227	8.06e+00	1a7tA	d.157.1.1	42032
2bc2A	227	8.63e+00	1a7tA	d.157.1.1	42031
1h4wA	224	9.78e+00		b.47.1.2	65622
1eut	605	1.21e+01	1eut	b.1.1.5	21891
				b.18.1.1	23712
				b.68.1.1	27609
1k24A	253	1.40e+01			
1euu	605	1.41e+01	1eut	b.1.1.5	21892
				b.18.1.1	23713
				b.68.1.1	27610
1e7uA	961	1.70e+01	1e8xA	a.118.1.6	19147
				b.7.1.1	23182
				d.15.1.5	37630
				d.144.1.4	41710
1qfxA	460	1.73e+01	1qfxA	c.60.1.3	33994
1k5jA	124	1.92e+01		b.13.3.1	68201
1tiu	98	2.00e+01	1tit	b.1.1.4	21715
1k92A	455	2.01e+01		c.26.2.1	68325
				d.210.1.1	68326
1idaA	99	2.02e+01	1fmb	b.50.1.1	26715
1fhoA	119	2.23e+01	1fhoA	b.55.1.1	26982
1b8xA	280	2.25e+01	1b8xA	a.45.1.1	17739
				c.47.1.5	33033
1bwyA	132	2.57e+01	1hmt	b.60.1.2	27172
1tit	98	2.66e+01	1tit	b.1.1.4	21716
2bpa2	175	2.84e+01	2bpa2		
4bcl	366	2.87e+01	4bcl	b.75.1.1	27968
1lci	550	2.89e+01	1lci	e.23.1.1	43349
1h6fA	193	2.98e+01			
1bak	119	3.02e+01	1bak	b.55.1.1	26973
1aocA	175	3.04e+01	1aocA	g.17.1.5	44817
2eifA	136	3.10e+01	1bkb	b.34.5.2	24607
				b.40.4.5	25339
1dcjA	81	3.27e+01	1dcjA	d.68.3.1	59115
1bvqA	141	3.34e+01	1bvqA	d.38.1.1	38542
1lo7A	141	3.36e+01			
1al0G	175	3.64e+01	2bpa2	b.10.1.1	23275
1ei5A	520	3.81e+01	1ei5A	b.61.3.1	27418
				b.61.3.1	27419
				e.3.1.1	42772
1bet	107	3.81e+01	1bndA	g.17.1.3	44801
1f97A	212	3.83e+01	1f97A	b.1.1.1	19763
				b.1.1.4	21764
1dst	228	3.89e+01	1a7s	b.47.1.2	26318
1fmb	104	4.00e+01	1fmb	b.50.1.1	26777