# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i7dA 659 1.33e-01 1d6mA e.10.1.1 61886 1hlcA 129 1.48e+00 1c1lA b.29.1.3 24208 1qfxA 460 2.23e+00 1qfxA c.60.1.3 33994 1d6mA 653 2.36e+00 1d6mA e.10.1.1 43248 1eur 365 2.63e+00 1eut b.68.1.1 27607 1c8oA 300 4.87e+00 1c8oA e.1.1.1 42677 1f0cA 305 5.87e+00 1c8oA e.1.1.1 42676 1ky9B 448 6.18e+00 1cxvA 164 6.69e+00 1ck7A d.92.1.11 40404 830cA 168 6.85e+00 1ck7A d.92.1.11 40400 1ky9A 448 7.05e+00 4htcI 65 7.09e+00 4htcI g.3.15.2 44368 1qhdA 398 1.02e+01 1qhdA a.115.1.2 63324 b.19.1.1 63325 1h70A 255 1.04e+01 1h70A d.126.1.3 60711 1h6fA 193 1.08e+01 1e7uA 961 1.09e+01 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1eut 605 1.13e+01 1eut b.1.1.5 21891 b.18.1.1 23712 b.68.1.1 27609 1euu 605 1.39e+01 1eut b.1.1.5 21892 b.18.1.1 23713 b.68.1.1 27610 1idaA 99 1.44e+01 1fmb b.50.1.1 26715 1dst 228 1.44e+01 1a7s b.47.1.2 26318 1f97A 212 1.74e+01 1f97A b.1.1.1 19763 b.1.1.4 21764 1e6fA 143 1.79e+01 1e6fA b.64.1.1 59304 1ey2A 471 1.82e+01 1ey2A b.82.1.4 28116 1fhoA 119 1.85e+01 1fhoA b.55.1.1 26982 2bc2A 227 1.93e+01 1a7tA d.157.1.1 42031 1iicA 422 1.99e+01 1nmtA d.108.1.2 62422 d.108.1.2 62423 1eybA 471 1.99e+01 1ey2A b.82.1.4 28115 2bc2B 227 2.00e+01 1a7tA d.157.1.1 42032 1k24A 253 2.14e+01 1ixmB 192 2.23e+01 1ixmA d.123.1.1 41115 1al0G 175 2.27e+01 2bpa2 b.10.1.1 23275 1dcjA 81 2.29e+01 1dcjA d.68.3.1 59115 4sgbI 51 2.32e+01 4sgbI g.15.1.2 44724 1h95A 79 2.73e+01 b.40.4.5 65742 1d7pM 159 2.75e+01 1cztA b.18.1.2 23718 1g2iA 166 2.84e+01 1g2iA c.23.16.2 31438 1hg8A 349 2.85e+01 b.80.1.3 65830 1jevA 517 2.91e+01 1jevA c.94.1.1 35720 2olbA 517 2.94e+01 1jevA c.94.1.1 35721 1ex7A 186 2.98e+01 1gky c.37.1.1 59537 1bxxA 285 3.02e+01 1bw8A b.2.7.1 22483 2bpa2 175 3.09e+01 2bpa2 1b8xA 280 3.15e+01 1b8xA a.45.1.1 17739 c.47.1.5 33033 1c5yB 253 3.26e+01 5ptp 2eifA 136 3.31e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1bet 107 3.32e+01 1bndA g.17.1.3 44801 1lo7A 141 3.40e+01 1gj7B 253 3.41e+01 1korA 400 3.50e+01 1bio 228 3.57e+01 5ptp b.47.1.2 26314 1fa8A 135 3.63e+01 1qipA d.32.1.1 38486 1f9zA 135 3.69e+01 1qipA d.32.1.1 38484 1ewfA 456 3.71e+01 1bp1 d.83.1.1 40024 d.83.1.1 40025 1k9vF 201 3.74e+01 c.23.16.1 68365 1d0dA 60 3.77e+01 1kigI g.8.1.2 44566 1tap 60 3.78e+01 1kigI g.8.1.2 44569 1gpwB 201 3.80e+01 c.23.16.1 65461 1ll8A 114 3.84e+01 1bvqA 141 3.92e+01 1bvqA d.38.1.1 38542 1eaxA 241 3.94e+01 b.47.1.2 64889