# List of top-scoring protein chains for t2k-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ky9B 448 2.44e-01 1ky9A 448 3.23e-01 830cA 168 3.49e-01 1ck7A d.92.1.11 40400 1cxvA 164 5.55e-01 1ck7A d.92.1.11 40404 1c8oA 300 5.58e-01 1c8oA e.1.1.1 42677 1eur 365 9.70e-01 1eut b.68.1.1 27607 1f0cA 305 1.68e+00 1c8oA e.1.1.1 42676 1i7dA 659 1.86e+00 1d6mA e.10.1.1 61886 1hlcA 129 1.87e+00 1c1lA b.29.1.3 24208 1d6mA 653 2.02e+00 1d6mA e.10.1.1 43248 4htcI 65 2.37e+00 4htcI g.3.15.2 44368 1qfxA 460 2.61e+00 1qfxA c.60.1.3 33994 1eybA 471 2.84e+00 1ey2A b.82.1.4 28115 1ey2A 471 2.93e+00 1ey2A b.82.1.4 28116 1h4wA 224 2.96e+00 b.47.1.2 65622 1eut 605 4.71e+00 1eut b.1.1.5 21891 b.18.1.1 23712 b.68.1.1 27609 1tiu 98 5.32e+00 1tit b.1.1.4 21715 1euu 605 5.50e+00 1eut b.1.1.5 21892 b.18.1.1 23713 b.68.1.1 27610 1dst 228 5.57e+00 1a7s b.47.1.2 26318 1tit 98 5.83e+00 1tit b.1.1.4 21716 1dazC 99 6.06e+00 1hvc b.50.1.1 26501 2bc2A 227 6.46e+00 1a7tA d.157.1.1 42031 2bc2B 227 6.57e+00 1a7tA d.157.1.1 42032 4sgbI 51 7.12e+00 4sgbI g.15.1.2 44724 1qhuA 460 7.21e+00 1qhuA b.66.1.1 27530 b.66.1.1 27531 1k1tA 99 7.44e+00 4bcl 366 7.67e+00 4bcl b.75.1.1 27968 1kzkA 99 7.67e+00 1ejfA 125 8.00e+00 1ejfA b.15.1.2 23683 1ei5A 520 8.08e+00 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1fa8A 135 8.32e+00 1qipA d.32.1.1 38486 1eaxA 241 8.62e+00 b.47.1.2 64889 1ee6A 197 9.20e+00 1ee6A b.80.1.1 28024 1hy7A 173 9.22e+00 d.92.1.11 65957 1iicA 422 9.64e+00 1nmtA d.108.1.2 62422 d.108.1.2 62423 1ewfA 456 1.03e+01 1bp1 d.83.1.1 40024 d.83.1.1 40025 1h8pA 109 1.07e+01 1a7s 221 1.12e+01 1a7s b.47.1.2 26284 1k92A 455 1.12e+01 c.26.2.1 68325 d.210.1.1 68326 1e6fA 143 1.13e+01 1e6fA b.64.1.1 59304 1f9zA 135 1.16e+01 1qipA d.32.1.1 38484 1bec 238 1.32e+01 1bec b.1.1.1 20627 b.1.1.2 21561 1lci 550 1.45e+01 1lci e.23.1.1 43349 1agx 331 1.45e+01 4pgaA c.88.1.1 35564 1hfs 160 1.57e+01 1hfc d.92.1.11 40370 2eifA 136 1.58e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1bwyA 132 1.64e+01 1hmt b.60.1.2 27172 1hvc 203 1.69e+01 1hvc b.50.1.1 26614 1lvl 458 1.77e+01 1lvl c.3.1.5 30567 c.3.1.5 30568 d.87.1.1 40205 1k24A 253 1.81e+01 1ha1 184 1.83e+01 1ha1 d.58.7.1 39147 d.58.7.1 39148 1dnlA 199 1.87e+01 1ci0A b.45.1.1 25753 1h70A 255 1.90e+01 1h70A d.126.1.3 60711 1g79A 218 1.92e+01 1ci0A b.45.1.1 25752 1difA 99 1.97e+01 1fmb b.50.1.1 26503 1ndoA 449 2.02e+01 1ndoA b.33.1.2 24444 d.129.3.3 41323 1bv8A 138 2.04e+01 1ayoA b.2.4.1 22430 1ao8 162 2.10e+01 3dfr c.71.1.1 34883 1tap 60 2.11e+01 1kigI g.8.1.2 44569 1dpo 223 2.14e+01 5ptp b.47.1.2 25975 1bp1 456 2.16e+01 1bp1 d.83.1.1 40026 d.83.1.1 40027 1ixmB 192 2.16e+01 1ixmA d.123.1.1 41115 1mc0A 368 2.20e+01 1mpyA 307 2.21e+01 1mpyA d.32.1.3 38508 d.32.1.3 38509 1prs 173 2.29e+01 1prs b.11.1.1 23625 b.11.1.1 23626 1e7uA 961 2.31e+01 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1gp0A 143 2.32e+01 1jrrA 382 2.34e+01 e.1.1.1 63256 1hg8A 349 2.41e+01 b.80.1.3 65830 1eg9A 449 2.43e+01 1ndoA b.33.1.2 24443 d.129.3.3 41322 1bio 228 2.57e+01 5ptp b.47.1.2 26314 1bxxA 285 2.63e+01 1bw8A b.2.7.1 22483 1jevA 517 2.79e+01 1jevA c.94.1.1 35720 1d0dA 60 2.84e+01 1kigI g.8.1.2 44566 2olbA 517 2.90e+01 1jevA c.94.1.1 35721 1l3kA 196 2.91e+01 1prr 173 3.01e+01 1prs b.11.1.1 23623 b.11.1.1 23624 1gky 187 3.05e+01 1gky c.37.1.1 31839 1m7bA 184 3.14e+01 1k0eA 453 3.17e+01 d.161.1.1 67938 1iyaA 187 3.21e+01 1cqyA 99 3.30e+01 1b9zA b.3.1.1 22527 1bw8A 321 3.32e+01 1bw8A b.2.7.1 22482 1i31A 314 3.38e+01 1bw8A b.2.7.1 22481 1bak 119 3.39e+01 1bak b.55.1.1 26973 1qsvA 101 3.40e+01 1fltX b.1.1.4 21771 1j8rA 196 3.42e+01 1j8rA b.2.3.3 62745 1ex7A 186 3.42e+01 1gky c.37.1.1 59537 1dbqA 289 3.71e+01 1qpzA c.93.1.1 35666 1k4nA 192 3.78e+01 1hj9A 226 3.83e+01 b.47.1.2 65845 1kigI 60 3.85e+01 1kigI g.8.1.2 44567 1fmb 104 3.86e+01 1fmb b.50.1.1 26777 5hvpA 99 3.91e+01 1fmb b.50.1.1 26605