%  SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 07/18/05_14:54:13
%  (c) 1992-2001 Regents of the University of California, Santa Cruz
%
%          Sequence Alignment and Modeling Software System
%         http://www.cse.ucsc.edu/research/compbio/sam.html
%
% ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
% R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
%  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
% K. Karplus, et al., What is the value added by human intervention in protein
%  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
% A. Krogh et al., Hidden Markov models in computational biology:
%  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
% ---------------------------------------------------------------------
%  YEL013W.t2k-100-30-dssp-ebghstl   Host: farm07    Tue Aug  2 09:42:27 2005
%  karplus                           Dir:  /projects/compbiousr/compbio0404/experiments/protein-predict/yeast/YEL0/YEL013W
% ---------------------------------------------------------------------
% Inserted Files: 
% Database Files:  /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.dssps
%

MODLIBMOD YEL013W.t2k-100-30-dssp-ebghstl YEL013W.t2k-100-30-dssp-ebghstl model number 1
% Calibration data for 12248 database sequences
% 3923 of 12248 scores > calibrate_threshold (0) used.
trackmod YEL013W.t2k-w0.5.mod,YEL013W.t2k.dssp-ebghstl.mod
trackcoeff 1.0,0.3
alphabet protein,EBGHSTL
lambda 1.512689
tau 0.749272
sw 2
dpstyle 0
jumpinprob 1.000000
jumpoutprob 1.000000
subtractnull 4
FIMmethodscore -6
insertmethodscore 0
adjust_score 2
ENDMODLIBMOD