# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i7wA 538 7.56e-59 3bct a.118.1.1 61909 1bk6A 422 1.36e-58 1bk5A a.118.1.1 19133 1jdhA 529 1.82e-58 a.118.1.1 66549 1g3jA 532 4.52e-58 3bct a.118.1.1 19114 1bk5A 422 4.58e-58 1bk5A a.118.1.1 19130 1ee4A 423 5.94e-58 1ee4A a.118.1.1 19128 1wa5B 530 2.52e-56 3bct 457 1.30e-53 3bct a.118.1.1 19112 1xm9A 457 1.54e-38 1gw5B 591 6.76e-35 a.118.1.10 70630 1b3uA 588 5.87e-22 1b3uA a.118.1.2 19135 1qgrA 876 6.63e-21 1qgrA a.118.1.1 19119 1qbkB 890 5.11e-20 1qbkB a.118.1.1 19127 2bptA 861 1.14e-18 1xqsA 280 2.54e-18 1xqrA 296 1.02e-17 1ibrB 462 9.55e-16 1qgrA a.118.1.1 19120 1gw5A 621 4.14e-14 a.118.1.10 70629 1ho8A 480 5.78e-12 1ho8A a.118.1.9 61107 1upkA 341 7.84e-09 a.118.1.15 99758 1oyzA 280 8.17e-09 a.118.1.16 93775 1z2cB 383 9.65e-07 2bnxA 386 3.21e-06 1wa5C 960 5.28e-05 1dvpA 220 6.88e-03 1dvpA a.118.9.2 19216 g.50.1.1 45358 1l5jA 865 4.31e-02 a.118.15.1 73592 c.8.2.1 73593 c.83.1.1 73594 1r6fA 310 7.80e-02 e.46.1.1 97149 1pujA 282 8.82e-02 c.37.1.8 88294 1lshA 1056 1.22e-01 a.118.4.1 74242 f.7.1.1 74243 f.7.1.1 74244 1mhqA 148 2.11e-01 a.118.9.2 84973 1vdyA 140 6.07e-01 1ft1B 437 2.27e+00 1ft1B a.102.4.3 18867 1lrv 244 2.29e+00 1lrv a.118.1.5 19146 1jplA 171 3.24e+00 a.118.9.2 67027 1bkdS 439 3.35e+00 1bkdS a.117.1.1 19111 1d8dB 437 3.54e+00 1ft1B a.102.4.3 18866 1w9cA 321 4.45e+00 1fchA 368 4.69e+00 1fchA a.118.8.1 19212 1jcrB 437 4.71e+00 a.102.4.3 66507 1yvrA 538 4.73e+00 1rz4A 226 5.06e+00 3xis 387 5.32e+00 4xis c.1.15.3 29423 1q5dA 419 5.43e+00 a.104.1.1 95891 4xis 387 5.75e+00 4xis c.1.15.3 29421 1ld8B 437 6.00e+00 a.102.4.3 73839 2xis 387 6.16e+00 4xis c.1.15.3 29427 1tn6B 437 6.18e+00 1hg2A 289 6.29e+00 1hg5A a.7.8.2 90358 a.118.9.3 90359 1np3A 338 6.92e+00 a.100.1.2 85946 c.2.1.6 85947 1hf8A 289 7.08e+00 1hg5A a.7.8.2 90354 a.118.9.3 90355 1hg5A 289 7.18e+00 1hg5A a.7.8.2 90360 a.118.9.3 90361 1dciA 275 7.19e+00 1dciA c.14.1.3 30918 1xo5A 183 7.39e+00 1dguA 183 7.39e+00 1dguA a.39.1.5 17333 1xis 387 7.46e+00 4xis c.1.15.3 29422 1mnzA 388 7.53e+00 c.1.15.3 79328 1fqiA 147 7.63e+00 1agrE a.91.1.1 18542 1gw9A 388 7.94e+00 c.1.15.3 70658 1w33A 181 8.07e+00 1wovA 250 8.95e+00 1s8nA 205 9.03e+00 1muwA 386 9.74e+00 c.1.15.3 79495 1elkA 157 1.12e+01 1dvpA a.118.9.2 19217 1sd4A 126 1.16e+01 1c3d 294 1.26e+01 1c3d a.102.4.4 18874 1ihgA 370 1.26e+01 2cpl a.118.8.1 62380 b.62.1.1 62381 1ounA 127 1.40e+01 1ounA d.17.4.2 38090 1n4qB 377 1.40e+01 a.102.4.3 91636 1eduA 149 1.40e+01 1eduA a.118.9.1 19215 1ujkA 147 1.42e+01 a.118.9.2 99457 1jwgA 147 1.45e+01 a.118.9.2 71911 1b0pA 1231 1.50e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1yacA 208 1.57e+01 1yacA c.33.1.3 31757 1ff9A 450 1.62e+01 1ff9A c.2.1.3 30039 d.81.1.2 39954 1kekA 1231 1.63e+01 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1f5nA 592 1.65e+01 1dg3A a.114.1.1 19077 c.37.1.8 32152 1oshA 232 1.66e+01 a.123.1.1 93496 1sva1 361 1.73e+01 1vpsA 1nvvS 481 1.80e+01 a.117.1.1 86279 1gy6A 127 1.82e+01 d.17.4.2 70736 1ar0A 127 1.94e+01 1ounA d.17.4.2 38092 1h0aA 158 2.10e+01 a.118.9.1 76434 1k92A 455 2.25e+01 c.26.2.1 68325 d.210.1.1 68326 1q16B 512 2.26e+01 d.58.1.5 95548 1r4vA 171 2.29e+01 a.197.1.1 97049 1eyhA 144 2.33e+01 1eduA a.118.9.1 19214 1sz9A 144 2.37e+01 1vjxA 157 2.40e+01 a.25.1.1 100837 1o77D 146 2.41e+01 c.23.2.1 81128 1y5iB 512 2.68e+01 1bcsA 263 2.87e+01 1ivyA c.69.1.5 34647 1dg3A 592 2.98e+01 1dg3A a.114.1.1 19078 c.37.1.8 32153 1zavA 180 3.15e+01 1o9iA 266 3.18e+01 a.25.1.3 92671 1inzA 148 3.22e+01 1eduA a.118.9.1 62610 1apyA 162 3.26e+01 1apyA d.153.1.5 42004 1je0A 236 3.27e+01 c.56.2.1 66581 1wr8A 231 3.33e+01 1q52A 314 3.35e+01 c.14.1.3 95846 1oz9A 150 3.36e+01 d.92.1.15 93808 1whsA 255 3.44e+01 1ivyA c.69.1.5 34649 1j9jA 247 3.47e+01 c.106.1.1 62758 1azwA 313 3.47e+01 1qtrA c.69.1.7 34658 1ku2A 241 3.51e+01 a.4.13.1 83096 a.177.1.1 83097 1jb2A 127 3.56e+01 d.17.4.2 71624 1y8oA 419 3.89e+01 1jf2A 195 3.94e+01 1ej3A a.39.1.5 62930 1v1rA 400 3.94e+01