# List of top-scoring protein chains for YEL012W.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ur6A 147 3.85e-32 d.20.1.1 99811 1x23A 155 7.21e-32 1z2uA 150 1.35e-31 1qcqA 148 2.83e-31 1u9aA d.20.1.1 38329 1ayzA 169 3.63e-31 1u9aA d.20.1.1 38326 2ayvA 166 5.34e-31 2aak 152 1.92e-30 1u9aA d.20.1.1 38325 1jasA 152 2.79e-30 d.20.1.1 90882 1y6lA 149 5.18e-30 1q34A 163 1.33e-29 d.20.1.1 95658 1z3dA 157 1.83e-29 1j7dB 152 9.91e-29 1u9aA d.20.1.1 62681 1jbbA 153 1.72e-28 1u9aA d.20.1.1 62842 1jatA 155 1.85e-28 1u9aA d.20.1.1 62818 1ylaA 202 5.75e-28 1tteA 215 1.17e-27 a.5.2.1 107295 d.20.1.1 107296 1pzvA 164 1.41e-27 d.20.1.1 88342 2bepA 159 1.73e-27 1yh2A 175 1.91e-27 1z5sA 158 2.08e-27 1kpsA 159 2.08e-27 d.20.1.1 68786 1a3s 160 2.08e-27 1u9aA d.20.1.1 38335 1u9aA 160 2.08e-27 1u9aA d.20.1.1 38333 2e2c 156 2.67e-27 1u9aA d.20.1.1 38336 2ucz 165 2.75e-27 1u9aA d.20.1.1 38330 1fzyA 149 4.42e-27 d.20.1.1 65072 2awfA 172 5.85e-27 1i7kA 179 3.20e-26 1u9aA d.20.1.1 61889 1zdnA 158 1.58e-25 1c4zD 154 1.61e-25 1u9aA d.20.1.1 38331 1yh6A 179 7.08e-25 1y8xA 160 2.61e-24 1yf9A 171 4.20e-24 1wzvA 155 2.19e-23 1yrvA 169 3.16e-23 2a4dA 160 4.98e-21 1j7dA 145 3.55e-20 1jatB d.20.1.1 62680 1jatB 138 1.19e-19 1jatB d.20.1.1 62819 2a7lA 136 2.21e-19 1zuoA 186 3.81e-13 1s1qA 145 3.25e-04 d.20.1.2 98351 1uzxA 169 1.24e-01 d.20.1.2 100238 2biiA 424 9.16e-01 1ohqA 120 9.58e-01 b.1.1.1 93027 2bihA 474 9.65e-01 1auiA 521 1.06e+00 1auiA d.159.1.3 42085 1mf8A 373 1.09e+00 d.159.1.3 79040 1ywzA 175 1.09e+00 1tcoA 375 1.10e+00 1auiA d.159.1.3 42084 1t4kB 217 1.96e+00 1u5jA 539 2.19e+00 a.5.7.2 107682 c.1.10.5 107683 1a7qH 116 2.79e+00 1gc1H b.1.1.1 19955 1s3hA 539 3.33e+00 a.5.7.2 105235 c.1.10.5 105236 1rqbA 539 3.33e+00 a.5.7.2 105057 c.1.10.5 105058 2es9A 115 4.24e+00 1bvkB 117 4.42e+00 1gc1H b.1.1.1 20279 1eqfA 280 5.33e+00 1eqfA a.29.2.1 16972 a.29.2.1 16973 1a8y 367 6.24e+00 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1c3cA 429 6.31e+00 1c3cA a.127.1.1 19425 1mlbB 218 6.35e+00 1igtB b.1.1.1 20051 b.1.1.2 21093 1c3uA 431 6.41e+00 1c3cA a.127.1.1 19427 1ks8A 433 6.54e+00 a.102.1.2 77519 2ac5A 316 6.66e+00 1mhpH 219 7.04e+00 b.1.1.1 84967 b.1.1.2 84968 2ac3A 316 7.15e+00 1m63A 372 7.27e+00 d.159.1.3 78677 2hrpH 226 7.50e+00 1igtB b.1.1.1 20171 b.1.1.2 21195 3pmgA 561 8.87e+00 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1x09A 253 9.09e+00 1kipB 116 9.20e+00 1gc1H b.1.1.1 19957 1uehA 253 9.23e+00 c.101.1.1 99259 1xpjA 126 9.25e+00 1a2yB 116 9.32e+00 1gc1H b.1.1.1 19927 1a7oH 116 9.33e+00 1gc1H b.1.1.1 19943 1fe8H 210 9.43e+00 1igtB b.1.1.1 59786 b.1.1.2 59787 1kiqB 116 9.49e+00 1gc1H b.1.1.1 19939 1wteA 272 1.00e+01 1dl7H 112 1.10e+01 1f3rB b.1.1.1 20499 1knoB 220 1.13e+01 1igtB b.1.1.1 20009 b.1.1.2 21063 1c5dB 215 1.14e+01 1igtB b.1.1.1 20415 b.1.1.2 21387 1v0jA 399 1.15e+01 1vcjA 389 1.18e+01 b.68.1.1 100559 1iayA 428 1.18e+01 1b8gA c.67.1.4 62130 1b9vA 390 1.18e+01 2qwc b.68.1.1 27603 1bihA 395 1.19e+01 1bihA b.1.1.4 21752 b.1.1.4 21753 b.1.1.4 21754 b.1.1.4 21755 1inf 390 1.19e+01 2qwc b.68.1.1 27602 1l0qA 391 1.20e+01 b.1.3.1 77644 b.69.2.3 77645 1jlyA 304 1.22e+01 1jlyA b.42.3.1 25587 b.42.3.1 25588 2gfbB 219 1.29e+01 b.1.1.1 19993 b.1.1.2 21047 1i8kB 124 1.33e+01 b.1.1.1 71131 3sqcA 631 1.40e+01 2sqcA a.102.4.2 18860 a.102.4.2 18861 1umpA 631 1.41e+01 a.102.4.2 99619 a.102.4.2 99620 1yw5A 177 1.56e+01 2sqcA 631 1.60e+01 2sqcA a.102.4.2 18854 a.102.4.2 18855 1ehkA 562 1.64e+01 1ehkA f.24.1.1 43624 1xmeA 568 1.65e+01 1cicD 218 1.71e+01 1igtB b.1.1.1 19963 b.1.1.2 21023 1sj6A 101 1.72e+01 1z10A 476 1.75e+01 1b2pA 119 1.77e+01 1b2pA b.78.1.1 27998 1y0kA 209 1.86e+01 1ul1X 379 1.90e+01 1qe5A 266 1.96e+01 1b8oA c.56.2.1 33784 1xaoA 121 2.08e+01 1nsoA 107 2.10e+01 b.50.1.1 80713 1uedA 406 2.19e+01 a.104.1.1 99256 1m8kA 181 2.30e+01 c.26.1.3 84876 1hybA 181 2.30e+01 1f9aA c.26.1.3 61399 1m8fA 181 2.32e+01 c.26.1.3 84873 1nf8A 207 2.32e+01 c.33.1.3 85630 1m8gA 181 2.33e+01 c.26.1.3 84874 1ej2A 181 2.36e+01 1f9aA c.26.1.3 59414 1sh1 48 2.40e+01 1sh1 g.9.1.1 44597 1jr6A 142 2.40e+01 c.37.1.14 71821 1nu0A 138 2.41e+01 c.55.3.8 92165 1ywqA 200 2.43e+01 1oakH 223 2.44e+01 1igtB b.1.1.1 20291 b.1.1.2 21283 1fnsH 225 2.45e+01 1igtB b.1.1.1 20289 b.1.1.2 21281 1eyvA 156 2.46e+01 1eyvA a.79.1.1 18446 1sj2A 743 2.46e+01 a.93.1.3 105597 a.93.1.3 105598 1m2aA 110 2.54e+01 c.47.1.11 78472 1nmnA 138 2.55e+01 c.55.3.8 91978 1shi 49 2.56e+01 1sh1 g.9.1.1 44599 1r71A 178 2.72e+01 a.4.14.1 104823 1yejH 222 2.73e+01 1mfa b.1.1.1 20141 b.1.1.2 21171 1yedB 226 2.73e+01 1mfa b.1.1.1 20151 b.1.1.2 21181 1m8jA 181 2.77e+01 c.26.1.3 84875 1uxvA 501 2.84e+01 c.82.1.1 108127 1ky8A 501 2.86e+01 c.82.1.1 77628 1p2cB 218 2.94e+01 b.1.1.1 93917 b.1.1.2 93918 1ukxA 137 3.00e+01 d.20.1.3 107919 1nf9A 207 3.11e+01 c.33.1.3 85631 1m2bA 110 3.26e+01 c.47.1.11 78474 1pkfA 419 3.29e+01 a.104.1.1 94829 1tdj 514 3.39e+01 1tdj c.79.1.1 35297 d.58.18.2 39356 d.58.18.2 39357 1yacA 208 3.43e+01 1yacA c.33.1.3 31757 1m2dA 110 3.49e+01 c.47.1.11 78476 1uxtA 501 3.51e+01 c.82.1.1 108125 1u60A 310 3.53e+01 e.3.1.2 107692 2aw2A 120 3.56e+01 1epxA 370 3.57e+01 1fbaA c.1.10.1 29150 1h0aA 158 3.58e+01 a.118.9.1 76434 1inzA 148 3.60e+01 1eduA a.118.9.1 62610 1kf6D 119 3.60e+01 f.21.2.2 72400 1w2wB 191 3.62e+01 1i8tA 367 3.65e+01 c.4.1.3 66094 d.16.1.7 66095 1l7tH 221 3.68e+01 b.1.1.1 77799 b.1.1.2 77800 1c1kA 217 3.72e+01 1c1kA a.120.1.1 19239 1vhzA 198 3.72e+01 d.113.1.1 100718 1frgH 220 3.75e+01 1igtB b.1.1.1 19925 b.1.1.2 21019 2as0A 396 3.76e+01 1wn7A 774 3.90e+01 2c43A 323 3.90e+01 1nstA 325 3.91e+01 1nstA c.37.1.5 31951 2c1lA 358 3.99e+01