# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1x23A 155 1.67e-42 1z2uA 150 5.76e-42 2ayvA 166 1.33e-41 1y6lA 149 1.67e-40 2bepA 159 9.98e-38 1jatA 155 1.82e-37 1u9aA d.20.1.1 62818 1jbbA 153 1.85e-37 1u9aA d.20.1.1 62842 1yh2A 175 5.25e-37 1u9aA 160 9.34e-37 1u9aA d.20.1.1 38333 2e2c 156 1.09e-36 1u9aA d.20.1.1 38336 1fzyA 149 1.33e-36 d.20.1.1 65072 2ucz 165 1.24e-35 1u9aA d.20.1.1 38330 1i7kA 179 5.19e-35 1u9aA d.20.1.1 61889 1fxtA 149 6.77e-35 d.20.1.1 65055 1zdnA 158 1.79e-33 1yh6A 179 9.00e-33 1yrvA 169 6.50e-32 1wzvA 155 1.62e-31 1yf9A 171 4.31e-31 2awfA 172 6.62e-30 2a4dA 160 1.92e-25 1j7dA 145 1.41e-24 1jatB d.20.1.1 62680 1jatB 138 9.96e-24 1jatB d.20.1.1 62819 1zuoA 186 2.11e-17 1uzxA 169 4.13e-05 d.20.1.2 100238 1s1qA 145 5.02e-05 d.20.1.2 98351 1kppA 145 1.85e-04 d.20.1.2 72846 2ac3A 316 3.49e-02 1ukxA 137 2.61e-01 d.20.1.3 107919 2ac5A 316 2.99e-01 1ywzA 175 4.44e-01 2bi7A 384 1.19e+00 1t5eA 360 1.27e+00 f.46.1.1 106436 1i8kB 124 1.41e+00 b.1.1.1 71131 1w9hA 427 1.43e+00 1srqA 341 1.76e+00 e.55.1.1 105967 1ny9A 143 2.51e+00 a.181.1.1 86401 1h3fA 432 2.89e+00 c.26.1.1 76631 d.66.1.4 76632 1vf7A 369 2.97e+00 f.46.1.1 108557 2es9A 115 3.07e+00 1usuA 260 3.31e+00 d.14.1.8 99885 1a2yB 116 3.56e+00 1gc1H b.1.1.1 19927 1kbhB 59 3.68e+00 a.153.1.1 68383 1h3oB 76 4.94e+00 a.22.1.3 76645 1mkeA 152 5.72e+00 b.55.1.4 79231 1ezvH 74 5.73e+00 1be3H f.28.1.1 59552 2biiA 424 6.10e+00 1eqfA 280 6.38e+00 1eqfA a.29.2.1 16972 a.29.2.1 16973 1l0qA 391 6.70e+00 b.1.3.1 77644 b.69.2.3 77645 1chrA 370 6.94e+00 1mucA c.1.11.2 29252 d.54.1.1 38896 1v0jA 399 6.96e+00 1bp3B 211 6.97e+00 1axiB b.1.2.1 22031 b.1.2.1 22032 1qhtA 775 6.98e+00 1tgoA c.55.3.5 33722 e.8.1.1 43011 2auaA 224 7.22e+00 1vfaB 116 7.35e+00 1gc1H b.1.1.1 19929 1g7jB 116 7.35e+00 1f3rB b.1.1.1 19933 1xaoA 121 7.76e+00 6gsvA 217 7.81e+00 1b8xA a.45.1.1 17633 c.47.1.5 32925 1i5nA 146 8.64e+00 1i5nA a.24.10.3 61805 1winA 143 8.81e+00 1yqcA 170 9.41e+00 1jpzA 473 9.77e+00 a.104.1.1 67069 2bmhA 455 9.88e+00 1bu7A a.104.1.1 18941 1eyvA 156 1.06e+01 1eyvA a.79.1.1 18446 1y7rA 133 1.07e+01 2bnxA 386 1.13e+01 1cdi 179 1.28e+01 1cdy b.1.1.1 19727 b.1.1.3 21666 1aa0 113 1.32e+01 1aa0 h.1.17.1 45659 1c1kA 217 1.33e+01 1c1kA a.120.1.1 19239 1cd9C 175 1.49e+01 1bgc a.26.1.1 16816 1tgoA 773 1.51e+01 1tgoA c.55.3.5 33721 e.8.1.1 43010 1qnoA 344 1.54e+01 1qnoA c.1.8.3 28838 1fohA 664 1.59e+01 1fohA c.3.1.2 30381 c.47.1.10 33078 d.16.1.2 37900 1xkrA 206 1.68e+01 1jj2L 194 1.75e+01 1ffkI d.12.1.2 63097 1fcdC 174 1.79e+01 1fcdC a.3.1.4 15966 a.3.1.4 15967 1ugjA 141 1.79e+01 b.41.1.3 107826 2ae6A 166 1.82e+01 1kb9F 74 1.85e+01 f.28.1.1 77321 1jj2M 186 1.87e+01 1ffkK c.55.4.1 63098 1rcd 173 2.05e+01 2fha a.25.1.1 16687 1s72N 187 2.08e+01 c.55.4.1 105333 1pnsB 234 2.08e+01 i.1.1.1 88169 1mqkH 127 2.10e+01 b.1.1.1 85053 1j5eB 256 2.13e+01 c.23.15.1 71543 1i8tA 367 2.17e+01 c.4.1.3 66094 d.16.1.7 66095 1gtkA 313 2.23e+01 c.94.1.1 76346 d.50.2.1 76347 1who 96 2.33e+01 1who b.7.3.1 23215 1wteA 272 2.36e+01 1ysc 421 2.39e+01 1ivyA c.69.1.5 34652 1oaqH 121 2.47e+01 b.1.1.1 92707 1qqcA 773 2.53e+01 1tgoA c.55.3.5 33724 e.8.1.1 43013 1qnrA 344 2.54e+01 1qnoA c.1.8.3 28834 1pda 315 2.62e+01 1pda c.94.1.1 35751 d.50.2.1 38794 1ug8A 87 2.66e+01 d.68.7.1 107825 1c4kA 730 2.68e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1ezfA 340 2.80e+01 1ezfA a.128.1.2 19440 1bfa 134 2.86e+01 1bea a.52.1.2 17827 1tafA 68 2.88e+01 1tafA a.22.1.3 16481 1j05B 121 2.95e+01 b.1.1.1 90736 1pn0A 665 2.95e+01 c.3.1.2 94918 c.47.1.10 94919 d.16.1.2 94920 1bea 127 3.05e+01 1bea a.52.1.2 17826 1u0fA 564 3.10e+01 1llnA 262 3.21e+01 d.165.1.1 84625 1hilB 220 3.44e+01 1igtB b.1.1.1 19787 b.1.1.2 20897 1qrdA 273 3.46e+01 1d4aA c.23.5.3 31217 1ks8A 433 3.47e+01 a.102.1.2 77519 1t2jA 116 3.50e+01 1qgiA 259 3.53e+01 1qgiA d.2.1.7 37001 1sedA 117 3.76e+01 a.219.1.1 105449 1wloA 136 3.78e+01 1rt8A 513 3.87e+01 a.40.1.1 105095 1nekC 129 3.91e+01 f.21.2.2 80431 1w4xA 542 3.92e+01 c.3.1.5 109171 c.3.1.5 109172