# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1x23A 155 2.99e-43 1z2uA 150 9.21e-43 2ayvA 166 2.68e-42 1y6lA 149 7.48e-41 2bepA 159 6.62e-38 1jbbA 153 1.10e-37 1u9aA d.20.1.1 62842 1jatA 155 1.27e-37 1u9aA d.20.1.1 62818 1yh2A 175 1.49e-37 1u9aA 160 3.33e-37 1u9aA d.20.1.1 38333 2e2c 156 5.59e-37 1u9aA d.20.1.1 38336 1fzyA 149 1.09e-36 d.20.1.1 65072 2ucz 165 3.88e-36 1u9aA d.20.1.1 38330 1fxtA 149 4.17e-36 d.20.1.1 65055 1i7kA 179 1.50e-35 1u9aA d.20.1.1 61889 1zdnA 158 2.33e-34 1yh6A 179 5.49e-34 1yf9A 171 1.74e-32 1yrvA 169 3.99e-32 1wzvA 155 1.92e-31 2awfA 172 1.34e-30 2a4dA 160 2.66e-26 1jatB 138 1.39e-25 1jatB d.20.1.1 62819 1j7dA 145 8.88e-25 1jatB d.20.1.1 62680 1zuoA 186 4.57e-17 1s1qA 145 1.35e-05 d.20.1.2 98351 1uzxA 169 9.85e-05 d.20.1.2 100238 1kppA 145 2.17e-04 d.20.1.2 72846 2ac3A 316 1.27e-01 1l0qA 391 5.12e-01 b.1.3.1 77644 b.69.2.3 77645 1i8kB 124 6.20e-01 b.1.1.1 71131 2ac5A 316 7.57e-01 1ukxA 137 7.60e-01 d.20.1.3 107919 2es9A 115 8.48e-01 1eqfA 280 1.15e+00 1eqfA a.29.2.1 16972 a.29.2.1 16973 1srqA 341 1.19e+00 e.55.1.1 105967 1a2yB 116 1.71e+00 1gc1H b.1.1.1 19927 1g7jB 116 1.77e+00 1f3rB b.1.1.1 19933 1vfaB 116 1.82e+00 1gc1H b.1.1.1 19929 1um0A 365 2.14e+00 d.258.1.1 107942 1h3fA 432 2.16e+00 c.26.1.1 76631 d.66.1.4 76632 1ny9A 143 2.29e+00 a.181.1.1 86401 1eyvA 156 2.30e+00 1eyvA a.79.1.1 18446 6gsvA 217 2.57e+00 1b8xA a.45.1.1 17633 c.47.1.5 32925 1tgoA 773 2.86e+00 1tgoA c.55.3.5 33721 e.8.1.1 43010 1ks8A 433 3.14e+00 a.102.1.2 77519 1usuA 260 3.14e+00 d.14.1.8 99885 1nekC 129 3.62e+00 f.21.2.2 80431 1vhzA 198 3.71e+00 d.113.1.1 100718 1qhtA 775 4.69e+00 1tgoA c.55.3.5 33722 e.8.1.1 43011 1ezvH 74 4.77e+00 1be3H f.28.1.1 59552 1kb9F 74 4.79e+00 f.28.1.1 77321 1ywzA 175 4.80e+00 1t5eA 360 4.92e+00 f.46.1.1 106436 1chrA 370 5.69e+00 1mucA c.1.11.2 29252 d.54.1.1 38896 1su0B 159 6.00e+00 d.224.1.2 106015 1xaoA 121 6.33e+00 2bnxA 386 6.39e+00 1hilB 220 7.18e+00 1igtB b.1.1.1 19787 b.1.1.2 20897 1t2jA 116 7.76e+00 1c1kA 217 8.76e+00 1c1kA a.120.1.1 19239 1mqkH 127 8.84e+00 b.1.1.1 85053 1who 96 8.96e+00 1who b.7.3.1 23215 2bi7A 384 9.85e+00 1w9hA 427 1.02e+01 2auaA 224 1.03e+01 1bp3B 211 1.05e+01 1axiB b.1.2.1 22031 b.1.2.1 22032 2bmhA 455 1.09e+01 1bu7A a.104.1.1 18941 1go3E 187 1.16e+01 b.40.4.5 83054 d.230.1.1 83055 1y4wA 518 1.24e+01 1nu5A 370 1.30e+01 c.1.11.2 92183 d.54.1.1 92184 1ornA 226 1.30e+01 a.96.1.1 87342 1w27A 714 1.37e+01 1h3oB 76 1.43e+01 a.22.1.3 76645 1ju2A 536 1.46e+01 c.3.1.2 77169 d.16.1.1 77170 1bu7A 455 1.50e+01 1bu7A a.104.1.1 18937 1cd9C 175 1.54e+01 1bgc a.26.1.1 16816 1b2pA 119 1.60e+01 1b2pA b.78.1.1 27998 1ugjA 141 1.65e+01 b.41.1.3 107826 1kbhB 59 1.79e+01 a.153.1.1 68383 1g9mC 185 1.84e+01 1cdy b.1.1.1 19721 b.1.1.3 21660 8fabB 224 1.89e+01 1igtB b.1.1.1 19773 b.1.1.2 20883 1bihA 395 1.89e+01 1bihA b.1.1.4 21752 b.1.1.4 21753 b.1.1.4 21754 b.1.1.4 21755 1winA 143 1.92e+01 1fjgB 256 1.98e+01 1fjfB c.23.15.1 31400 1rt8A 513 2.02e+01 a.40.1.1 105095 1ex1A 605 2.05e+01 1ex1A c.1.8.7 29013 c.23.11.1 31347 2ar9A 278 2.09e+01 2biiA 424 2.10e+01 1ej8A 140 2.16e+01 1qupA b.1.8.1 22300 1iexA 605 2.19e+01 c.1.8.7 66127 c.23.11.1 66128 1mlcB 218 2.29e+01 1igtB b.1.1.1 20053 b.1.1.2 21095 1mkeA 152 2.29e+01 b.55.1.4 79231 1phk 298 2.30e+01 1cdkA d.144.1.7 41635 2abk 211 2.36e+01 2abk a.96.1.1 18743 1qnrA 344 2.38e+01 1qnoA c.1.8.3 28834 1cdi 179 2.43e+01 1cdy b.1.1.1 19727 b.1.1.3 21666 1vhnA 318 2.54e+01 c.1.4.1 100693 1qupA 222 2.59e+01 1qupA b.1.8.1 22301 d.58.17.1 39352 1y7rA 133 2.63e+01 1h0aA 158 2.65e+01 a.118.9.1 76434 1n67A 359 2.69e+01 b.2.3.4 85354 b.2.3.4 85355 1qgiA 259 2.73e+01 1qgiA d.2.1.7 37001 1aa0 113 2.75e+01 1aa0 h.1.17.1 45659 1px5A 349 2.78e+01 a.160.1.2 95277 d.218.1.6 95278 3cd4 182 2.85e+01 1cdy b.1.1.1 19720 b.1.1.3 21659 1jpzA 473 2.85e+01 a.104.1.1 67069 1eyhA 144 2.92e+01 1eduA a.118.9.1 19214 1eduA 149 2.94e+01 1eduA a.118.9.1 19215 1xx1A 285 2.99e+01 1vixA 420 3.06e+01 c.56.5.4 100777 d.58.19.1 100778 2c1dA 264 3.09e+01 1oaqH 121 3.15e+01 b.1.1.1 92707 1dvfD 120 3.16e+01 1mfa b.1.1.1 20107 1bs0A 384 3.19e+01 1bs0A c.67.1.4 34490 1ee4A 423 3.21e+01 1ee4A a.118.1.1 19128 1tqgA 105 3.23e+01 a.24.10.3 107224 1dypA 271 3.26e+01 1dypA b.29.1.2 24185 1um5H 217 3.31e+01 1kf6D 119 3.32e+01 f.21.2.2 72400 1vj7A 393 3.33e+01 a.211.1.1 100801 d.218.1.8 100802 2aqjA 538 3.34e+01 1ejbA 168 3.35e+01 1rvv1 c.16.1.1 59417 1pnsB 234 3.35e+01 i.1.1.1 88169 1yjsA 419 3.36e+01 1qnoA 344 3.42e+01 1qnoA c.1.8.3 28838 1j05B 121 3.42e+01 b.1.1.1 90736 1c4kA 730 3.56e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1cdy 178 3.59e+01 1cdy b.1.1.1 19719 b.1.1.3 21658 1gz2A 142 3.62e+01 d.169.1.1 83392 4pep 326 3.68e+01 1smrA b.50.1.2 26843 1xkrA 206 3.69e+01 1j5eB 256 3.89e+01 c.23.15.1 71543 1yqcA 170 3.91e+01 2occA 514 3.91e+01 2occA f.24.1.1 43518 1q0xH 221 3.95e+01 b.1.1.1 95517 b.1.1.2 95518