# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1x23A 155 1.04e-41 1z2uA 150 2.63e-41 2ayvA 166 5.91e-41 1y6lA 149 1.35e-39 2bepA 159 2.34e-37 1jatA 155 5.68e-37 1u9aA d.20.1.1 62818 1jbbA 153 1.10e-36 1u9aA d.20.1.1 62842 1yh2A 175 1.69e-36 2e2c 156 2.87e-36 1u9aA d.20.1.1 38336 1u9aA 160 3.74e-36 1u9aA d.20.1.1 38333 1fzyA 149 5.86e-36 d.20.1.1 65072 2ucz 165 7.55e-36 1u9aA d.20.1.1 38330 1i7kA 179 3.03e-35 1u9aA d.20.1.1 61889 1fxtA 149 1.76e-34 d.20.1.1 65055 1zdnA 158 1.45e-33 1yh6A 179 4.09e-32 1yrvA 169 7.88e-32 1yf9A 171 2.01e-31 1wzvA 155 7.42e-31 2awfA 172 2.73e-30 2a4dA 160 6.24e-26 1jatB 138 1.55e-24 1jatB d.20.1.1 62819 1j7dA 145 2.09e-24 1jatB d.20.1.1 62680 1zuoA 186 1.78e-16 1s1qA 145 6.57e-06 d.20.1.2 98351 1uzxA 169 2.28e-05 d.20.1.2 100238 1kppA 145 3.56e-04 d.20.1.2 72846 2ac3A 316 5.67e-02 1ukxA 137 2.37e-01 d.20.1.3 107919 1h3fA 432 3.55e-01 c.26.1.1 76631 d.66.1.4 76632 2ac5A 316 4.93e-01 2es9A 115 5.79e-01 1l0qA 391 7.22e-01 b.1.3.1 77644 b.69.2.3 77645 1ny9A 143 7.29e-01 a.181.1.1 86401 1eqfA 280 8.74e-01 1eqfA a.29.2.1 16972 a.29.2.1 16973 1srqA 341 1.03e+00 e.55.1.1 105967 6gsvA 217 1.19e+00 1b8xA a.45.1.1 17633 c.47.1.5 32925 1usuA 260 1.32e+00 d.14.1.8 99885 2bi7A 384 1.51e+00 1kb9F 74 1.71e+00 f.28.1.1 77321 2biiA 424 2.07e+00 1jpzA 473 2.09e+00 a.104.1.1 67069 1ezvH 74 2.16e+00 1be3H f.28.1.1 59552 1tgoA 773 4.04e+00 1tgoA c.55.3.5 33721 e.8.1.1 43010 1bu7A 455 4.51e+00 1bu7A a.104.1.1 18937 1i8kB 124 5.04e+00 b.1.1.1 71131 2bnxA 386 5.59e+00 1cd9C 175 5.65e+00 1bgc a.26.1.1 16816 1nu5A 370 5.91e+00 c.1.11.2 92183 d.54.1.1 92184 1h3oB 76 6.19e+00 a.22.1.3 76645 1kbhB 59 6.34e+00 a.153.1.1 68383 1a2yB 116 6.40e+00 1gc1H b.1.1.1 19927 1vfaB 116 6.56e+00 1gc1H b.1.1.1 19929 1um0A 365 6.61e+00 d.258.1.1 107942 1qnrA 344 6.62e+00 1qnoA c.1.8.3 28834 1qnoA 344 6.67e+00 1qnoA c.1.8.3 28838 2bmhA 455 6.82e+00 1bu7A a.104.1.1 18941 1nekC 129 7.03e+00 f.21.2.2 80431 1i5nA 146 7.11e+00 1i5nA a.24.10.3 61805 1g7jB 116 7.13e+00 1f3rB b.1.1.1 19933 1aa0 113 7.49e+00 1aa0 h.1.17.1 45659 1eyvA 156 7.83e+00 1eyvA a.79.1.1 18446 1lm8V 160 8.54e+00 b.3.3.1 74035 2bzuA 181 8.62e+00 1w9hA 427 8.72e+00 1w27A 714 9.25e+00 1px5A 349 9.29e+00 a.160.1.2 95277 d.218.1.6 95278 1c4kA 730 9.40e+00 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1y4wA 518 9.41e+00 1mkeA 152 9.72e+00 b.55.1.4 79231 1qhtA 775 9.87e+00 1tgoA c.55.3.5 33722 e.8.1.1 43011 1ks8A 433 9.96e+00 a.102.1.2 77519 1xaoA 121 1.03e+01 1who 96 1.06e+01 1who b.7.3.1 23215 1chrA 370 1.07e+01 1mucA c.1.11.2 29252 d.54.1.1 38896 1vcbC 160 1.09e+01 1vcbC b.3.3.1 22535 1c1kA 217 1.12e+01 1c1kA a.120.1.1 19239 1fohA 664 1.18e+01 1fohA c.3.1.2 30381 c.47.1.10 33078 d.16.1.2 37900 1g9mC 185 1.19e+01 1cdy b.1.1.1 19721 b.1.1.3 21660 1ugjA 141 1.20e+01 b.41.1.3 107826 2auaA 224 1.22e+01 1brwA 433 1.24e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1oaqH 121 1.26e+01 b.1.1.1 92707 1htrB 329 1.34e+01 1smrA 1v0jA 399 1.35e+01 1gtkA 313 1.35e+01 c.94.1.1 76346 d.50.2.1 76347 1bp3B 211 1.37e+01 1axiB b.1.2.1 22031 b.1.2.1 22032 1winA 143 1.49e+01 2c1dA 264 1.50e+01 1pn0A 665 1.51e+01 c.3.1.2 94918 c.47.1.10 94919 d.16.1.2 94920 1wteA 272 1.53e+01 2bzvA 181 1.54e+01 1y7rA 133 1.56e+01 1b0pA 1231 1.57e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1t5eA 360 1.59e+01 f.46.1.1 106436 3cd4 182 1.62e+01 1cdy b.1.1.1 19720 b.1.1.3 21659 1um5H 217 1.63e+01 1kekA 1231 1.71e+01 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1dvfD 120 1.71e+01 1mfa b.1.1.1 20107 1wlqC 201 1.72e+01 a.4.5.52 109400 1vj7A 393 1.78e+01 a.211.1.1 100801 d.218.1.8 100802 1qgiA 259 1.81e+01 1qgiA d.2.1.7 37001 1ej8A 140 1.82e+01 1qupA b.1.8.1 22300 1rcd 173 1.92e+01 2fha a.25.1.1 16687 1otkA 249 1.99e+01 a.25.1.2 93521 1iu4A 331 1.99e+01 d.3.1.8 71430 2abk 211 2.02e+01 2abk a.96.1.1 18743 1es2A 262 2.03e+01 1skf e.3.1.1 42680 1phk 298 2.03e+01 1cdkA d.144.1.7 41635 1qupA 222 2.05e+01 1qupA b.1.8.1 22301 d.58.17.1 39352 1fz1C 389 2.07e+01 1mtyB a.25.1.2 16746 1pda 315 2.08e+01 1pda c.94.1.1 35751 d.50.2.1 38794 1dypA 271 2.08e+01 1dypA b.29.1.2 24185 1ezfA 340 2.14e+01 1ezfA a.128.1.2 19440 1qqcA 773 2.15e+01 1tgoA c.55.3.5 33724 e.8.1.1 43013 1humA 69 2.17e+01 1b3aA d.9.1.1 37397 1cdi 179 2.19e+01 1cdy b.1.1.1 19727 b.1.1.3 21666 1lqbC 162 2.25e+01 b.3.3.1 74186 1go3E 187 2.28e+01 b.40.4.5 83054 d.230.1.1 83055 1mqkH 127 2.30e+01 b.1.1.1 85053 1a6wH 120 2.37e+01 1mfa b.1.1.1 20253 2ae6A 166 2.38e+01 1vixA 420 2.42e+01 c.56.5.4 100777 d.58.19.1 100778 2aqjA 538 2.43e+01 1tqgA 105 2.43e+01 a.24.10.3 107224 1mmq 170 2.49e+01 1hfc d.92.1.11 40396 1b2pA 119 2.54e+01 1b2pA b.78.1.1 27998 1gz2A 142 2.56e+01 d.169.1.1 83392 2ar9A 278 2.57e+01 1fm2A 169 2.58e+01 1fm2A d.153.1.2 59877 2aq4A 434 2.74e+01 1q8yA 373 2.75e+01 d.144.1.7 96234 1vhnA 318 2.82e+01 c.1.4.1 100693 1xkrA 206 2.91e+01 1iknD 236 2.91e+01 1iknD d.211.1.1 19171 1fuxA 166 2.94e+01 1fjjA b.17.1.2 60034 1cdy 178 2.94e+01 1cdy b.1.1.1 19719 b.1.1.3 21658 1t2jA 116 2.94e+01 1yx4A 132 3.02e+01 1yakA 263 3.03e+01 1w4xA 542 3.03e+01 c.3.1.5 109171 c.3.1.5 109172 1ir6A 424 3.08e+01 c.107.1.2 71342 1i8tA 367 3.09e+01 c.4.1.3 66094 d.16.1.7 66095 1sq2N 113 3.10e+01 b.1.1.1 105881 1jj2L 194 3.11e+01 1ffkI d.12.1.2 63097 1iapA 211 3.11e+01 a.91.1.1 62119 2d2eA 250 3.14e+01 1dseA 292 3.17e+01 1ryc a.93.1.1 59130 1xszA 356 3.17e+01 1ywzA 175 3.19e+01 1j05B 121 3.19e+01 b.1.1.1 90736 1kmiZ 214 3.21e+01 h.4.11.1 72752 8prkA 287 3.22e+01 1wgjA b.40.5.1 25395 1yqcA 170 3.23e+01 1q08A 99 3.30e+01 a.6.1.3 95497 1jpnA 296 3.30e+01 a.24.13.1 67039 c.37.1.10 67040 1hs6A 611 3.33e+01 1hs6A a.118.1.7 61233 b.98.1.1 61234 d.92.1.13 61235 1pnsB 234 3.36e+01 i.1.1.1 88169 1ng1 294 3.36e+01 1ng1 a.24.13.1 16961 c.37.1.10 32272 1ls1A 295 3.38e+01 a.24.13.1 78170 c.37.1.10 78171 1ejbA 168 3.40e+01 1rvv1 c.16.1.1 59417 1qrdA 273 3.45e+01 1d4aA c.23.5.3 31217 1rt8A 513 3.47e+01 a.40.1.1 105095 1h0aA 158 3.54e+01 a.118.9.1 76434 1wgjA 286 3.58e+01 1wgjA b.40.5.1 25397 1j5eB 256 3.62e+01 c.23.15.1 71543 1keyA 235 3.66e+01 a.118.16.1 72389 1es4A 262 3.79e+01 1skf e.3.1.1 42683 1ju2A 536 3.84e+01 c.3.1.2 77169 d.16.1.1 77170 1ordA 730 3.89e+01 1ordA c.23.1.4 31274 c.67.1.5 34503 d.125.1.1 41124 1wj7A 104 3.91e+01 1wloA 136 3.93e+01