# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1z2uA 150 8.16e-42 1x23A 155 1.79e-41 2ayvA 166 6.61e-41 1y6lA 149 2.71e-39 1jbbA 153 3.27e-38 1u9aA d.20.1.1 62842 1jatA 155 3.98e-38 1u9aA d.20.1.1 62818 2bepA 159 9.76e-37 1yh2A 175 2.22e-36 1u9aA 160 3.61e-36 1u9aA d.20.1.1 38333 1fzyA 149 5.47e-36 d.20.1.1 65072 2e2c 156 8.10e-36 1u9aA d.20.1.1 38336 1fxtA 149 1.24e-35 d.20.1.1 65055 2ucz 165 1.73e-35 1u9aA d.20.1.1 38330 1i7kA 179 3.09e-34 1u9aA d.20.1.1 61889 1zdnA 158 1.63e-33 1yh6A 179 1.58e-32 1yf9A 171 1.07e-31 1wzvA 155 1.75e-30 1yrvA 169 1.58e-29 2awfA 172 4.36e-29 2a4dA 160 4.26e-27 1j7dA 145 8.00e-26 1jatB d.20.1.1 62680 1jatB 138 2.35e-25 1jatB d.20.1.1 62819 1zuoA 186 8.90e-17 1s1qA 145 5.39e-04 d.20.1.2 98351 1kppA 145 1.08e-03 d.20.1.2 72846 1lj9A 144 1.26e-02 a.4.5.28 78035 1uzxA 169 7.91e-02 d.20.1.2 100238 1xpjA 126 1.24e-01 2es9A 115 1.73e-01 2a9uA 144 2.80e-01 1sd4A 126 6.38e-01 a.4.5.39 105428 1ywzA 175 6.71e-01 1ovqA 138 7.38e-01 c.55.3.8 93607 2biiA 424 7.41e-01 1nu0A 138 1.53e+00 c.55.3.8 92165 1on2A 142 2.56e+00 a.4.5.24 87103 a.76.1.1 87104 1winA 143 2.57e+00 1w33A 181 2.94e+00 1s7oA 113 3.44e+00 a.4.13.3 105354 1ucyH 150 3.52e+00 1ucyH 1o5oA 221 4.09e+00 c.61.1.1 92509 1ks8A 433 5.30e+00 a.102.1.2 77519 1ryc 294 5.77e+00 1ryc a.93.1.1 18601 1br0A 120 5.86e+00 a.47.2.1 17772 1lxnA 99 7.66e+00 d.58.48.1 84737 1y7rA 133 8.26e+00 1lnwA 147 8.36e+00 a.4.5.28 78104 2a61A 145 8.69e+00 1ukxA 137 9.03e+00 d.20.1.3 107919 1v9sA 208 9.32e+00 1dd5A 185 9.59e+00 1dd5A d.67.3.1 39564 1i8kB 124 9.71e+00 b.1.1.1 71131 1t3wA 148 1.03e+01 1bihA 395 1.04e+01 1bihA b.1.1.4 21752 b.1.1.4 21753 b.1.1.4 21754 b.1.1.4 21755 1fqvJ 149 1.07e+01 1fqvD a.157.1.1 19266 d.42.1.1 38670 1uedA 406 1.10e+01 a.104.1.1 99256 1eyvA 156 1.10e+01 1eyvA a.79.1.1 18446 1s7mA 174 1.12e+01 b.144.1.1 98649 1fewA 184 1.34e+01 1fewA a.7.4.1 16334 1eqfA 280 1.40e+01 1eqfA a.29.2.1 16972 a.29.2.1 16973 1wlmA 151 1.45e+01 1qqcA 773 1.47e+01 1tgoA c.55.3.5 33724 e.8.1.1 43013 1ykhA 108 1.50e+01 1ez3A 127 1.56e+01 1dn1B a.47.2.1 17768 2aobA 99 1.58e+01 1iv8A 720 1.63e+01 b.71.1.1 76842 c.1.8.1 76843 2a6qA 86 1.69e+01 1wm3A 72 1.75e+01 1n4kA 381 1.78e+01 a.118.22.1 79992 b.42.6.1 79993 1gh6A 114 1.79e+01 a.2.3.1 65191 2nllB 103 1.82e+01 2nllB g.39.1.2 45115 1bg1A 722 1.85e+01 1bg1A a.47.1.1 17767 b.2.5.5 22461 d.93.1.1 40527 1fc3A 120 1.87e+01 1fc3A a.4.6.3 16237 1pcfA 66 2.00e+01 1pcfA d.18.1.1 38142 1h3fA 432 2.05e+01 c.26.1.1 76631 d.66.1.4 76632 1vfaB 116 2.08e+01 1gc1H b.1.1.1 19929 1v63A 101 2.09e+01 a.21.1.1 108391 1okrA 123 2.13e+01 a.4.5.39 93269 1h9dB 134 2.21e+01 2jhbA b.54.1.1 60822 1oyjA 231 2.27e+01 a.45.1.1 87597 c.47.1.5 87598 1ccg 291 2.29e+01 1ryc a.93.1.1 18627 1lv3A 68 2.31e+01 g.39.1.9 78231 1fqvD 149 2.35e+01 1fqvD a.157.1.1 19263 d.42.1.1 38667 1hs6A 611 2.37e+01 1hs6A a.118.1.7 61233 b.98.1.1 61234 d.92.1.13 61235 1g7jB 116 2.38e+01 1f3rB b.1.1.1 19933 1dseA 292 2.58e+01 1ryc a.93.1.1 59130 1e50B 134 2.60e+01 2jhbA b.54.1.1 59245 1om2A 95 2.60e+01 1om2A a.23.4.1 16520 1pszA 303 2.62e+01 1toaA c.92.2.2 35600 1jb0D 138 2.64e+01 1jb0D d.187.1.1 62823 2astA 159 2.65e+01 2hmqA 113 2.66e+01 2mhr a.24.4.1 16568 1ggwA 140 2.67e+01 1ggwA a.39.1.5 60490 1jb1A 205 2.76e+01 1jb1A c.91.1.2 62832 1ajyA 71 2.78e+01 1zmeC g.38.1.1 45083 h.1.3.1 45516 1ibjA 464 2.79e+01 1ibjA c.67.1.3 62162 1uyrA 737 2.89e+01 c.14.1.4 100188 c.14.1.4 100189 2hmzA 113 3.01e+01 2mhr a.24.4.1 16564 1iyjA 70 3.01e+01 1a17 166 3.03e+01 1a17 a.118.8.1 19206 1kewA 361 3.05e+01 c.2.1.2 68544 1e0fI 57 3.08e+01 1e0fI g.3.15.2 44377 1zmbA 290 3.09e+01 1jsqA 582 3.09e+01 i.13.1.1 63270 1nzyA 269 3.13e+01 1nzyA c.14.1.3 30903 2ar0A 541 3.19e+01 1is1A 185 3.21e+01 d.67.3.1 83704 1ds4A 292 3.21e+01 1ryc a.93.1.1 59129 1ux8A 132 3.34e+01 1a0fA 201 3.41e+01 1a0fA a.45.1.1 17737 c.47.1.5 33031 1nuyA 337 3.50e+01 e.7.1.1 86213 1c4kA 730 3.56e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1f2tB 148 3.63e+01 1f2tB 1ieaA 192 3.68e+01 1iakA b.1.1.2 21631 d.19.1.1 38205 1bcsA 263 3.69e+01 1ivyA c.69.1.5 34647 1d7qA 143 3.78e+01 1d7qA b.40.4.5 25331 1z53A 294 3.84e+01 1r7jA 95 3.91e+01 a.4.5.49 104836 1ni4A 365 3.92e+01 c.36.1.11 85728